1 Response_reg#1
4-115 aa · 112 aa · 48.3% of protein
Raw token
Response_reg:4:1.7e-34:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J4G22_RS06350
Response regulator OmpR family
Clostridioides difficile · GCF_025532335
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025532335#J4G22_RS06350Stable P2CS identifier used across views.
GenomeGCF_025532335Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-228 aa · 75 aa · 32.3% of protein
Raw token
Trans_reg_C:154:5.94e-34:228:75:77- Raw architecture: Response_reg:4:1.7e-34:115:113:111#Trans_reg_C:154:5.94e-34:228:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025532335::NZ_JAGDLY010000044.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span447526-449149Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ4G22_06295RefSeq proteinWP_005933804.1
Context group ID
GCF_025532335::NZ_JAGDLY010000044.1::G00021Context members
J4G22_RS06345J4G22_RS06350
Partner locus tags
J4G22_RS06345J4G22_RS06350
Partner old locus tags
J4G22_06290J4G22_06295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005933804.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1BT70Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1BT70_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ4G22_RS06350Primary locus identifier stored in the genes table.
Old locus tagJ4G22_06295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGDLY010000044.1Sequence record reported by the local genomic context database.
Genomic interval448 451-449 149 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span447 526-449 149 ntGCF_025532335::NZ_JAGDLY010000044.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532335::NZ_JAGDLY010000044.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGDLY010000044.1All displayed genes belong to this local TCS context.
Neighborhood span447 526-449 149 nt1 624 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
447 526 nt449 149 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J4G22_RS06345GCF_025532335#J4G22_RS06345
HKClassic
447 526-448 449 nt · Reverse (-)
J4G22_RS06350GCF_025532335#J4G22_RS06350
RROmpRCurrent focus
448 451-449 149 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS08885Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119822
Simplified PFAM architecture for RROC_1119822
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_1119822
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS08885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532335
AssemblyASM2553233v1 · Scaffoldhaploid
Genome composition4 417 807 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 49 · RR 56CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key