1 HisKA#1
207-272 aa · 66 aa · 16.1% of protein
Raw token
HisKA:207:0.0000000000000729:272:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J4G22_RS06140
Histidine kinase, Classic
Clostridioides difficile · GCF_025532335
ClassHKTypeClassicLength411 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025532335#J4G22_RS06140Stable P2CS identifier used across views.
GenomeGCF_025532335Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length411 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 411 aa (38.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa411 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
320-409 aa · 90 aa · 21.9% of protein
Raw token
HATPase_c:320:2.1e-21:409:90:109- Raw architecture: HisKA:207:0.0000000000000729:272:66:64#HATPase_c:320:2.1e-21:409:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025532335::NZ_JAGDLY010000044.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span396800-398714Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ4G22_06090RefSeq proteinWP_262801338.1
Context group ID
GCF_025532335::NZ_JAGDLY010000044.1::G00020Context members
J4G22_RS06140J4G22_RS06145
Partner locus tags
J4G22_RS06140J4G22_RS06145
Partner old locus tags
J4G22_06090J4G22_06095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_262801338.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ4G22_RS06140Primary locus identifier stored in the genes table.
Old locus tagJ4G22_06090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGDLY010000044.1Sequence record reported by the local genomic context database.
Genomic interval396 800-398 034 nt1 235 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span396 800-398 714 ntGCF_025532335::NZ_JAGDLY010000044.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532335::NZ_JAGDLY010000044.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGDLY010000044.1All displayed genes belong to this local TCS context.
Neighborhood span396 800-398 714 nt1 915 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
396 800 nt398 714 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J4G22_RS06140GCF_025532335#J4G22_RS06140
HKClassicCurrent focus
396 800-398 034 nt · Reverse (-)
J4G22_RS06145GCF_025532335#J4G22_RS06145
RROmpR
398 028-398 714 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900692315#E1255_RS09015Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2179928
Simplified PFAM architecture for HKOC_2179928
PFAM domain coverage: 174 / 430 aa (40.5%)
1 aa430 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-272] | HATPase_c[321-429]
- Domain count: 2
- Matched identifier: HKOC_2179928
- Positioned domains: HisKA 208-272 ; HATPase_c 321-429
Cluster members and taxonomy
Representative gene: GCF_900692315#E1255_RS09015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532335
AssemblyASM2553233v1 · Scaffoldhaploid
Genome composition4 417 807 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 49 · RR 56CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key