1 HisKA#1
48-106 aa · 59 aa · 22.8% of protein
Raw token
HisKA:48:0.0000000000000398:106:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
J4G22_RS00880
Histidine kinase, Classic
Clostridioides difficile · GCF_025532335
ClassHKTypeClassicLength259 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025532335#J4G22_RS00880Stable P2CS identifier used across views.
GenomeGCF_025532335Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length259 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 259 aa (61.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
159-257 aa · 99 aa · 38.2% of protein
Raw token
HATPase_c:159:3.76e-19:257:100:109- Raw architecture: HisKA:48:0.0000000000000398:106:59:64#HATPase_c:159:3.76e-19:257:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025532335::NZ_JAGDLY010000004.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34788-36631Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJ4G22_00875RefSeq proteinWP_021421323.1
Context group ID
GCF_025532335::NZ_JAGDLY010000004.1::G00003Context members
J4G22_RS00870J4G22_RS00880
Partner locus tags
J4G22_RS00870J4G22_RS00880
Partner old locus tags
J4G22_00870J4G22_00875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021421323.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJ4G22_RS00880Primary locus identifier stored in the genes table.
Old locus tagJ4G22_00875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAGDLY010000004.1Sequence record reported by the local genomic context database.
Genomic interval35 852-36 631 nt780 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 788-36 631 ntGCF_025532335::NZ_JAGDLY010000004.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025532335::NZ_JAGDLY010000004.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGDLY010000004.1All displayed genes belong to this local TCS context.
Neighborhood span34 788-36 631 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 788 nt36 631 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
J4G22_RS00870GCF_025532335#J4G22_RS00870
RROmpR
34 788-35 450 nt · Forward (+)
J4G22_RS00880GCF_025532335#J4G22_RS00880
HKClassicCurrent focus
35 852-36 631 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451745#QSK_RS02260Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2914533
Simplified PFAM architecture for HKOC_2914533
PFAM domain coverage: 162 / 259 aa (62.5%)
1 aa259 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[45-106] | HATPase_c[158-257]
- Domain count: 2
- Matched identifier: HKOC_2914533
- Positioned domains: HisKA 45-106 ; HATPase_c 158-257
Cluster members and taxonomy
Representative gene: GCF_000451745#QSK_RS02260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_025532335
AssemblyASM2553233v1 · Scaffoldhaploid
Genome composition4 417 807 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 49 · RR 56CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key