1 HisKA#1
85-152 aa · 68 aa · 21.9% of protein
Raw token
HisKA:85:0.0000000000000129:152:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OCF56_RS08990
Histidine kinase, Classic
Bacillus mycoides · GCF_025519005
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_025519005#OCF56_RS08990Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 311 aa (56.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
198-306 aa · 109 aa · 35.0% of protein
Raw token
HATPase_c:198:2.73e-25:306:109:109- Raw architecture: HisKA:85:0.0000000000000129:152:68:64#HATPase_c:198:2.73e-25:306:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_025519005::NZ_JAOPTI010000004.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span143934-145563Genomic interval covered by the local TCS group.
Identifiers
Old locus tagOCF56_09020RefSeq proteinWP_262449163.1
Context group ID
GCF_025519005::NZ_JAOPTI010000004.1::G00047Context members
OCF56_RS08985OCF56_RS08990
Partner locus tags
OCF56_RS08985OCF56_RS08990
Partner old locus tags
OCF56_09015OCF56_09020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_262449163.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOCF56_RS08990Primary locus identifier stored in the genes table.
Old locus tagOCF56_09020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAOPTI010000004.1Sequence record reported by the local genomic context database.
Genomic interval144 628-145 563 nt936 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span143 934-145 563 ntGCF_025519005::NZ_JAOPTI010000004.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_025519005::NZ_JAOPTI010000004.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAOPTI010000004.1All displayed genes belong to this local TCS context.
Neighborhood span143 934-145 563 nt1 630 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 934 nt145 563 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OCF56_RS08985GCF_025519005#OCF56_RS08985
RROmpR
143 934-144 626 nt · Forward (+)
OCF56_RS08990GCF_025519005#OCF56_RS08990
HKClassicCurrent focus
144 628-145 563 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025519005#OCF56_RS08990The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2877763
Simplified PFAM architecture for HKOC_2877763
PFAM domain coverage: 173 / 311 aa (55.6%)
1 aa311 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-152] | HATPase_c[201-306]
- Domain count: 2
- Matched identifier: HKOC_2877763
- Positioned domains: HisKA 86-152 ; HATPase_c 201-306
Cluster members and taxonomy
Representative gene: GCF_025519005#OCF56_RS08990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_025519005
AssemblyASM2551900v1 · Contighaploid
Genome composition5 310 936 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 116 · HK 62 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key