1 HAMP#1
263-331 aa · 69 aa · 10.6% of protein
Raw token
HAMP:263:0.00000000000000102:331:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NUU00_RS06905
Histidine kinase, Classic
Bifidobacterium breve · GCF_024665435
ClassHKTypeClassicLength652 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024665435#NUU00_RS06905Stable P2CS identifier used across views.
GenomeGCF_024665435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length652 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 652 aa (44.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa652 aa
Domain-by-domain annotation3 items
2 HisKA#2
343-412 aa · 70 aa · 10.7% of protein
Raw token
HisKA:343:5.99e-18:412:70:643 HATPase_c#3
476-623 aa · 148 aa · 22.7% of protein
Raw token
HATPase_c:476:5.39e-21:623:148:109- Raw architecture: HAMP:263:0.00000000000000102:331:69:69#HisKA:343:5.99e-18:412:70:64#HATPase_c:476:5.39e-21:623:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024665435::NZ_CP102536.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1598059-1600792Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNUU00_06905RefSeq proteinWP_372684191.1
Context group ID
GCF_024665435::NZ_CP102536.1::G00012Context members
NUU00_RS06905NUU00_RS06910
Partner locus tags
NUU00_RS06905NUU00_RS06910
Partner old locus tags
NUU00_06905NUU00_06910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_372684191.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNUU00_RS06905Primary locus identifier stored in the genes table.
Old locus tagNUU00_06905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP102536.1Sequence record reported by the local genomic context database.
Genomic interval1 598 059-1 600 017 nt1 959 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 598 059-1 600 792 ntGCF_024665435::NZ_CP102536.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024665435::NZ_CP102536.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP102536.1All displayed genes belong to this local TCS context.
Neighborhood span1 598 059-1 600 792 nt2 734 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 598 059 nt1 600 792 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NUU00_RS06905GCF_024665435#NUU00_RS06905
HKClassicCurrent focus
1 598 059-1 600 017 nt · Reverse (-)
NUU00_RS06910GCF_024665435#NUU00_RS06910
RROmpR
1 600 061-1 600 792 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024665435#NUU00_RS06905The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0893253
Simplified PFAM architecture for HKOC_0893253
PFAM domain coverage: 268 / 652 aa (41.1%)
1 aa652 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[280-331] | HisKA[344-412] | HATPase_c[476-622]
- Domain count: 3
- Matched identifier: HKOC_0893253
- Positioned domains: HAMP 280-331 ; HisKA 344-412 ; HATPase_c 476-622
Cluster members and taxonomy
Representative gene: GCF_024665435#NUU00_RS06905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_024665435
AssemblyASM2466543v1 · Complete Genomehaploid
Genome composition2 336 700 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 31 · HK 11 · RR 17CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key