1 Response_reg#1
4-108 aa · 105 aa · 43.6% of protein
Raw token
Response_reg:4:4.69e-17:108:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE682_RS16420
Response regulator LytTR family
Agathobacter rectalis · GCF_024462455
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024462455#NE682_RS16420Stable P2CS identifier used across views.
GenomeGCF_024462455Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-226 aa · 82 aa · 34.0% of protein
Raw token
LytTR:145:1.91e-16:226:87:98- Raw architecture: Response_reg:4:4.69e-17:108:107:111#LytTR:145:1.91e-16:226:87:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024462455::NZ_JANGBN010000040.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3447-4172Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE682_16350RefSeq proteinWP_155177785.1
Context group ID
GCF_024462455::NZ_JANGBN010000040.1::G00033Context members
NE682_RS16420
Partner locus tags
NE682_RS16420
Partner old locus tags
NE682_16350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_155177785.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE682_RS16420Primary locus identifier stored in the genes table.
Old locus tagNE682_16350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANGBN010000040.1Sequence record reported by the local genomic context database.
Genomic interval3 447-4 172 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 447-4 172 ntGCF_024462455::NZ_JANGBN010000040.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024462455::NZ_JANGBN010000040.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANGBN010000040.1All displayed genes belong to this local TCS context.
Neighborhood span3 447-4 172 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 447 nt4 172 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NE682_RS16420GCF_024462455#NE682_RS16420
RRLytTRCurrent focus
3 447-4 172 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718405#GMD29_RS17105Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0869516
Simplified PFAM architecture for RROC_0869516
PFAM domain coverage: 189 / 241 aa (78.4%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-109] | LytTR[144-226]
- Domain count: 2
- Matched identifier: RROC_0869516
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; LytTR 144-226 ; LytTR 144-226
Cluster members and taxonomy
Representative gene: GCF_009718405#GMD29_RS17105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_024462455
AssemblyASM2446245v1 · Contighaploid
Genome composition3 485 306 bp · 41,5% GCAgathobacter rectalis
Signal transduction countsGenes 73 · HK 30 · RR 42CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key