1 HisKA#1
199-258 aa · 60 aa · 14.4% of protein
Raw token
HisKA:199:0.00000000124:258:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF97_RS16050
Histidine kinase, Classic
Clostridioides difficile · GCF_024260045
ClassHKTypeClassicLength417 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024260045#NMF97_RS16050Stable P2CS identifier used across views.
GenomeGCF_024260045Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length417 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 417 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa417 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
304-410 aa · 107 aa · 25.7% of protein
Raw token
HATPase_c:304:2.29e-21:410:107:109- Raw architecture: HisKA:199:0.00000000124:258:60:64#HATPase_c:304:2.29e-21:410:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024260045::NZ_JANCLB010000094.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11129-13064Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF97_16020RefSeq proteinWP_254481804.1
Context group ID
GCF_024260045::NZ_JANCLB010000094.1::G00054Context members
NMF97_RS16050NMF97_RS16055
Partner locus tags
NMF97_RS16050NMF97_RS16055
Partner old locus tags
NMF97_16020NMF97_16025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254481804.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF97_RS16050Primary locus identifier stored in the genes table.
Old locus tagNMF97_16020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCLB010000094.1Sequence record reported by the local genomic context database.
Genomic interval11 129-12 382 nt1 254 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 129-13 064 ntGCF_024260045::NZ_JANCLB010000094.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260045::NZ_JANCLB010000094.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCLB010000094.1All displayed genes belong to this local TCS context.
Neighborhood span11 129-13 064 nt1 936 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 129 nt13 064 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NMF97_RS16050GCF_024260045#NMF97_RS16050
HKClassicCurrent focus
11 129-12 382 nt · Reverse (-)
NMF97_RS16055GCF_024260045#NMF97_RS16055
RROmpR
12 360-13 064 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024260045#NMF97_RS16050The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2297403
Simplified PFAM architecture for HKOC_2297403
PFAM domain coverage: 169 / 417 aa (40.5%)
1 aa417 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[196-258] | HATPase_c[305-410]
- Domain count: 2
- Matched identifier: HKOC_2297403
- Positioned domains: HisKA 196-258 ; HATPase_c 305-410
Cluster members and taxonomy
Representative gene: GCF_024260045#NMF97_RS16050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260045
AssemblyASM2426004v1 · Contighaploid
Genome composition4 065 303 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 48 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key