1 Response_reg#1
4-115 aa · 112 aa · 48.1% of protein
Raw token
Response_reg:4:1.41e-35:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF99_RS15735
Response regulator OmpR family
Clostridioides difficile · GCF_024259965
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024259965#NMF99_RS15735Stable P2CS identifier used across views.
GenomeGCF_024259965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:155:9.56e-36:229:75:77- Raw architecture: Response_reg:4:1.41e-35:115:113:111#Trans_reg_C:155:9.56e-36:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024259965::NZ_JANCLH010000072.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4243-5869Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF99_15730RefSeq proteinWP_107578172.1
Context group ID
GCF_024259965::NZ_JANCLH010000072.1::G00045Context members
NMF99_RS15730NMF99_RS15735
Partner locus tags
NMF99_RS15730NMF99_RS15735
Partner old locus tags
NMF99_15725NMF99_15730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_107578172.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF99_RS15735Primary locus identifier stored in the genes table.
Old locus tagNMF99_15730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCLH010000072.1Sequence record reported by the local genomic context database.
Genomic interval5 168-5 869 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 243-5 869 ntGCF_024259965::NZ_JANCLH010000072.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024259965::NZ_JANCLH010000072.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCLH010000072.1All displayed genes belong to this local TCS context.
Neighborhood span4 243-5 869 nt1 627 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 243 nt5 869 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NMF99_RS15730GCF_024259965#NMF99_RS15730
HKClassic
4 243-5 166 nt · Reverse (-)
NMF99_RS15735GCF_024259965#NMF99_RS15735
RROmpRCurrent focus
5 168-5 869 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024259965#NMF99_RS15735The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1102008
Simplified PFAM architecture for RROC_1102008
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_1102008
- Positioned domains: Response_reg 4-115 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_024259965#NMF99_RS15735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024259965
AssemblyASM2425996v1 · Contighaploid
Genome composition4 076 492 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key