1 Response_reg#1
8-109 aa · 102 aa · 38.8% of protein
Raw token
Response_reg:8:5.79e-20:109:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NBH12_RS10150
Response regulator LytTR family
Bifidobacterium sp. M3-N-101 · GCF_023656805
ClassRRTypeLytTRLength263 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_023656805#NBH12_RS10150Stable P2CS identifier used across views.
GenomeGCF_023656805Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 263 aa (72.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-226 aa · 88 aa · 33.5% of protein
Raw token
LytTR:139:3.76e-20:226:93:98- Raw architecture: Response_reg:8:5.79e-20:109:107:111#LytTR:139:3.76e-20:226:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_023656805::NZ_JAMOKQ010000013.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6820-7611Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNBH12_10140RefSeq proteinWP_134859123.1
Context group ID
GCF_023656805::NZ_JAMOKQ010000013.1::G00005Context members
NBH12_RS10150
Partner locus tags
NBH12_RS10150
Partner old locus tags
NBH12_10140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_134859123.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNBH12_RS10150Primary locus identifier stored in the genes table.
Old locus tagNBH12_10140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMOKQ010000013.1Sequence record reported by the local genomic context database.
Genomic interval6 820-7 611 nt792 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 820-7 611 ntGCF_023656805::NZ_JAMOKQ010000013.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023656805::NZ_JAMOKQ010000013.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMOKQ010000013.1All displayed genes belong to this local TCS context.
Neighborhood span6 820-7 611 nt792 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 820 nt7 611 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NBH12_RS10150GCF_023656805#NBH12_RS10150
RRLytTRCurrent focus
6 820-7 611 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003370195#CE167_RS03125Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0640588
Simplified PFAM architecture for RROC_0640588
PFAM domain coverage: 193 / 263 aa (73.4%)
1 aa263 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-110] | LytTR[140-228]
- Domain count: 2
- Matched identifier: RROC_0640588
- Positioned domains: Response_reg 7-110 ; Response_reg 7-110 ; LytTR 140-228 ; LytTR 140-228
Cluster members and taxonomy
Representative gene: GCF_003370195#CE167_RS03125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 949 653 · GCF_023656805
AssemblyASM2365680v1 · Scaffoldhaploid
Genome composition2 457 728 bp · 59,0% GCBifidobacterium sp. M3-N-101
Signal transduction countsGenes 25 · HK 9 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key