1 Response_reg#1
4-114 aa · 111 aa · 69.8% of protein
Raw token
Response_reg:4:7.32e-26:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NBH12_RS03715
Response regulator, CheY family
Bifidobacterium sp. M3-N-101 · GCF_023656805
ClassRRTypeCheYLength159 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_023656805#NBH12_RS03715Stable P2CS identifier used across views.
GenomeGCF_023656805Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length159 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 159 aa (69.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa159 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:7.32e-26:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_023656805::NZ_JAMOKQ010000004.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13255-13734Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNBH12_03715RefSeq proteinWP_171844491.1
Context group ID
GCF_023656805::NZ_JAMOKQ010000004.1::G00009Context members
NBH12_RS03715
Partner locus tags
NBH12_RS03715
Partner old locus tags
NBH12_03715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_171844491.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNBH12_RS03715Primary locus identifier stored in the genes table.
Old locus tagNBH12_03715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMOKQ010000004.1Sequence record reported by the local genomic context database.
Genomic interval13 255-13 734 nt480 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 255-13 734 ntGCF_023656805::NZ_JAMOKQ010000004.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023656805::NZ_JAMOKQ010000004.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMOKQ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span13 255-13 734 nt480 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 255 nt13 734 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NBH12_RS03715GCF_023656805#NBH12_RS03715
RRCheYCurrent focus
13 255-13 734 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000213865#HMPREF9228_RS06130Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2209140
Simplified PFAM architecture for RROC_2209140
PFAM domain coverage: 110 / 159 aa (69.2%)
1 aa159 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-113]
- Domain count: 1
- Matched identifier: RROC_2209140
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113
Cluster members and taxonomy
Representative gene: GCF_000213865#HMPREF9228_RS06130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 949 653 · GCF_023656805
AssemblyASM2365680v1 · Scaffoldhaploid
Genome composition2 457 728 bp · 59,0% GCBifidobacterium sp. M3-N-101
Signal transduction countsGenes 25 · HK 9 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key