1 Response_reg#1
6-118 aa · 113 aa · 51.8% of protein
Raw token
Response_reg:6:1.15e-35:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M8675_RS24590
Response regulator, unclassified
Escherichia coli · GCF_023554935
ClassRRTypeunclassifiedLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_023554935#M8675_RS24590Stable P2CS identifier used across views.
GenomeGCF_023554935Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 218 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 GerE#2
149-204 aa · 56 aa · 25.7% of protein
Raw token
GerE:149:1.14e-24:204:56:57- Raw architecture: Response_reg:6:1.15e-35:118:113:111#GerE:149:1.14e-24:204:56:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_023554935::NZ_JAMJPD010000290.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span225-881Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM8675_24585RefSeq proteinWP_213842888.1
Context group ID
GCF_023554935::NZ_JAMJPD010000290.1::G00019Context members
M8675_RS24590
Partner locus tags
M8675_RS24590
Partner old locus tags
M8675_24585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_213842888.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM8675_RS24590Primary locus identifier stored in the genes table.
Old locus tagM8675_24585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMJPD010000290.1Sequence record reported by the local genomic context database.
Genomic interval225-881 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span225-881 ntGCF_023554935::NZ_JAMJPD010000290.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023554935::NZ_JAMJPD010000290.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMJPD010000290.1All displayed genes belong to this local TCS context.
Neighborhood span225-881 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
225 nt881 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
M8675_RS24590GCF_023554935#M8675_RS24590
RRunclassifiedCurrent focus
225-881 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_023554935#M8675_RS24590The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1829438
Simplified PFAM architecture for RROC_1829438
PFAM domain coverage: 169 / 218 aa (77.5%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-118] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_1829438
- Positioned domains: Response_reg 6-118 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_023554935#M8675_RS24590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_023554935
AssemblyASM2355493v1 · Contighaploid
Genome composition4 821 938 bp · 51,0% GCEscherichia coli
Signal transduction countsGenes 66 · HK 31 · RR 35CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key