1 Response_reg#1
31-121 aa · 91 aa · 37.9% of protein
Raw token
Response_reg:31:0.00000237:121:95:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MTP40_RS00565
Response regulator LytTR family
Faecalibacterium sp. IP-3-29 · GCF_023347335
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_023347335#MTP40_RS00565Stable P2CS identifier used across views.
GenomeGCF_023347335Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 240 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
139-234 aa · 96 aa · 40.0% of protein
Raw token
LytTR:139:0.00000000000000667:234:101:98- Raw architecture: Response_reg:31:0.00000237:121:95:111#LytTR:139:0.00000000000000667:234:101:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_023347335::NZ_CP094471.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span124169-124891Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMTP40_00565RefSeq proteinWP_249259644.1
Context group ID
GCF_023347335::NZ_CP094471.1::G00002Context members
MTP40_RS00565
Partner locus tags
MTP40_RS00565
Partner old locus tags
MTP40_00565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_249259644.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMTP40_RS00565Primary locus identifier stored in the genes table.
Old locus tagMTP40_00565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP094471.1Sequence record reported by the local genomic context database.
Genomic interval124 169-124 891 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span124 169-124 891 ntGCF_023347335::NZ_CP094471.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023347335::NZ_CP094471.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP094471.1All displayed genes belong to this local TCS context.
Neighborhood span124 169-124 891 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
124 169 nt124 891 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MTP40_RS00565GCF_023347335#MTP40_RS00565
RRLytTRCurrent focus
124 169-124 891 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_023347335#MTP40_RS00565The current gene is the representative for this cluster.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0895370
Simplified PFAM architecture for RROC_0895370
PFAM domain coverage: 93 / 240 aa (38.8%)
1 aa240 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[141-233]
- Domain count: 1
- Matched identifier: RROC_0895370
- Positioned domains: LytTR 141-233
Cluster members and taxonomy
Representative gene: GCF_023347335#MTP40_RS00565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 929 489 · GCF_023347335
AssemblyASM2334733v1 · Complete Genomehaploid
Genome composition3 002 063 bp · 57,0% GCFaecalibacterium sp. IP-3-29
Signal transduction countsGenes 44 · HK 20 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key