1 HisKA#1
552-617 aa · 66 aa · 8.5% of protein
Raw token
HisKA:552:4.95e-17:617:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MUY39_RS09250
Histidine kinase, Classic
Blautia sp. NSJ-165 · GCF_022900055
ClassHKTypeClassicLength772 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022900055#MUY39_RS09250Stable P2CS identifier used across views.
GenomeGCF_022900055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length772 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 772 aa (21.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa772 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
670-772 aa · 103 aa · 13.3% of protein
Raw token
HATPase_c:670:0.000000000000639:772:108:109- Raw architecture: HisKA:552:4.95e-17:617:66:64#HATPase_c:670:0.000000000000639:772:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022900055::NZ_JALIRN010000005.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span205736-208739Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMUY39_09250RefSeq proteinWP_054351513.1
Context group ID
GCF_022900055::NZ_JALIRN010000005.1::G00055Context members
MUY39_RS09250MUY39_RS09255
Partner locus tags
MUY39_RS09250MUY39_RS09255
Partner old locus tags
MUY39_09250MUY39_09255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054351513.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FC76Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FC76_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMUY39_RS09250Primary locus identifier stored in the genes table.
Old locus tagMUY39_09250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALIRN010000005.1Sequence record reported by the local genomic context database.
Genomic interval205 736-208 054 nt2 319 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span205 736-208 739 ntGCF_022900055::NZ_JALIRN010000005.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022900055::NZ_JALIRN010000005.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALIRN010000005.1All displayed genes belong to this local TCS context.
Neighborhood span205 736-208 739 nt3 004 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
205 736 nt208 739 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MUY39_RS09250GCF_022900055#MUY39_RS09250
HKClassicCurrent focus
205 736-208 054 nt · Reverse (-)
MUY39_RS09255GCF_022900055#MUY39_RS09255
RROmpR
208 026-208 739 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS10755Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0614454
Simplified PFAM architecture for HKOC_0614454
PFAM domain coverage: 158 / 772 aa (20.5%)
1 aa772 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[552-617] | HATPase_c[665-756]
- Domain count: 2
- Matched identifier: HKOC_0614454
- Positioned domains: HisKA 552-617 ; HATPase_c 665-756
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS10755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 931 881 · GCF_022900055
AssemblyASM2290005v1 · Contighaploid
Genome composition6 470 235 bp · 46,5% GCBlautia sp. NSJ-165
Signal transduction countsGenes 272 · HK 140 · RR 129CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key