1 HAMP#1
315-384 aa · 70 aa · 11.6% of protein
Raw token
HAMP:315:0.00000000391:384:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MUY39_RS00905
Histidine kinase, Classic
Blautia sp. NSJ-165 · GCF_022900055
ClassHKTypeClassicLength601 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022900055#MUY39_RS00905Stable P2CS identifier used across views.
GenomeGCF_022900055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length601 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 601 aa (42.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa601 aa
Domain-by-domain annotation3 items
2 His_kinase#2
399-478 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:399:7.42e-31:478:80:803 HATPase_c#3
495-601 aa · 107 aa · 17.8% of protein
Raw token
HATPase_c:495:0.0000000641:601:114:109- Raw architecture: HAMP:315:0.00000000391:384:70:69#His_kinase:399:7.42e-31:478:80:80#HATPase_c:495:0.0000000641:601:114:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022900055::NZ_JALIRN010000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span229671-233004Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMUY39_00905RefSeq proteinWP_118593782.1
Context group ID
GCF_022900055::NZ_JALIRN010000001.1::G00006Context members
MUY39_RS00905MUY39_RS00910
Partner locus tags
MUY39_RS00905MUY39_RS00910
Partner old locus tags
MUY39_00905MUY39_00910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118593782.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DU42Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DU42_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMUY39_RS00905Primary locus identifier stored in the genes table.
Old locus tagMUY39_00905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALIRN010000001.1Sequence record reported by the local genomic context database.
Genomic interval229 671-231 476 nt1 806 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span229 671-233 004 ntGCF_022900055::NZ_JALIRN010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022900055::NZ_JALIRN010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALIRN010000001.1All displayed genes belong to this local TCS context.
Neighborhood span229 671-233 004 nt3 334 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
229 671 nt233 004 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MUY39_RS00905GCF_022900055#MUY39_RS00905
HKClassicCurrent focus
229 671-231 476 nt · Forward (+)
MUY39_RS00910GCF_022900055#MUY39_RS00910
RRunclassified
231 487-233 004 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS01895Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1048756
Simplified PFAM architecture for HKOC_1048756
PFAM domain coverage: 183 / 601 aa (30.4%)
1 aa601 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[399-476] | HATPase_c[496-600]
- Domain count: 2
- Matched identifier: HKOC_1048756
- Positioned domains: His_kinase 399-476 ; HATPase_c 496-600
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS01895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 931 881 · GCF_022900055
AssemblyASM2290005v1 · Contighaploid
Genome composition6 470 235 bp · 46,5% GCBlautia sp. NSJ-165
Signal transduction countsGenes 272 · HK 140 · RR 129CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key