1 Hpt#1
10-98 aa · 89 aa · 13.0% of protein
Raw token
Hpt:10:0.0000000000000882:98:89:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MUY39_RS07910
Histidine kinase, CheA
Blautia sp. NSJ-165 · GCF_022900055
ClassHKTypeCheALength683 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022900055#MUY39_RS07910Stable P2CS identifier used across views.
GenomeGCF_022900055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length683 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage417 / 683 aa (61.1%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa683 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
291-349 aa · 59 aa · 8.6% of protein
Raw token
H-kinase_dim:291:0.000000585:349:66:673 HATPase_c#3
395-534 aa · 140 aa · 20.5% of protein
Raw token
HATPase_c:395:1.25e-21:534:140:1094 CheW#4
544-672 aa · 129 aa · 18.9% of protein
Raw token
CheW:544:0.000000000000457:672:134:138- Raw architecture: Hpt:10:0.0000000000000882:98:89:84#H-kinase_dim:291:0.000000585:349:66:67#HATPase_c:395:1.25e-21:534:140:109#CheW:544:0.000000000000457:672:134:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022900055::NZ_JALIRN010000004.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span347345-350351Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMUY39_07910RefSeq proteinWP_033140333.1
Context group ID
GCF_022900055::NZ_JALIRN010000004.1::G00045Context members
MUY39_RS07905MUY39_RS07910
Partner locus tags
MUY39_RS07905MUY39_RS07910
Partner old locus tags
MUY39_07905MUY39_07910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033140333.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DHL3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DHL3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMUY39_RS07910Primary locus identifier stored in the genes table.
Old locus tagMUY39_07910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALIRN010000004.1Sequence record reported by the local genomic context database.
Genomic interval348 300-350 351 nt2 052 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span347 345-350 351 ntGCF_022900055::NZ_JALIRN010000004.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022900055::NZ_JALIRN010000004.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALIRN010000004.1All displayed genes belong to this local TCS context.
Neighborhood span347 345-350 351 nt3 007 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
347 345 nt350 351 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MUY39_RS07905GCF_022900055#MUY39_RS07905
RRPleD
347 345-348 286 nt · Forward (+)
MUY39_RS07910GCF_022900055#MUY39_RS07910
HKCheACurrent focus
348 300-350 351 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS20650Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + HATPase_c + CheW4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0808828
Simplified PFAM architecture for HKOC_0808828
PFAM domain coverage: 429 / 683 aa (62.8%)
1 aa683 aa
HptP2HATPase_cCheW
- Simplified architecture: Hpt + P2 + HATPase_c + CheW
- Raw architecture: Hpt[10-89] | P2[182-260] | HATPase_c[396-535] | CheW[543-672]
- Domain count: 4
- Matched identifier: HKOC_0808828
- Positioned domains: Hpt 10-89 ; P2 182-260 ; HATPase_c 396-535 ; CheW 543-672
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS20650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 931 881 · GCF_022900055
AssemblyASM2290005v1 · Contighaploid
Genome composition6 470 235 bp · 46,5% GCBlautia sp. NSJ-165
Signal transduction countsGenes 272 · HK 140 · RR 129CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key