1 HAMP#1
142-211 aa · 70 aa · 15.3% of protein
Raw token
HAMP:142:0.00000000000854:211:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MUY39_RS04420
Histidine kinase, Classic
Blautia sp. NSJ-165 · GCF_022900055
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022900055#MUY39_RS04420Stable P2CS identifier used across views.
GenomeGCF_022900055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 457 aa (52.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-300 aa · 65 aa · 14.2% of protein
Raw token
HisKA:236:0.0000000000234:300:65:643 HATPase_c#3
346-449 aa · 104 aa · 22.8% of protein
Raw token
HATPase_c:346:8.41e-19:449:108:109- Raw architecture: HAMP:142:0.00000000000854:211:70:69#HisKA:236:0.0000000000234:300:65:64#HATPase_c:346:8.41e-19:449:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022900055::NZ_JALIRN010000003.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span309156-311190Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMUY39_04420RefSeq proteinWP_004614922.1
Context group ID
GCF_022900055::NZ_JALIRN010000003.1::G00027Context members
MUY39_RS04415MUY39_RS04420
Partner locus tags
MUY39_RS04415MUY39_RS04420
Partner old locus tags
MUY39_04415MUY39_04420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004614922.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35UN82Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35UN82_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMUY39_RS04420Primary locus identifier stored in the genes table.
Old locus tagMUY39_04420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALIRN010000003.1Sequence record reported by the local genomic context database.
Genomic interval309 817-311 190 nt1 374 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span309 156-311 190 ntGCF_022900055::NZ_JALIRN010000003.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022900055::NZ_JALIRN010000003.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALIRN010000003.1All displayed genes belong to this local TCS context.
Neighborhood span309 156-311 190 nt2 035 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
309 156 nt311 190 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MUY39_RS04415GCF_022900055#MUY39_RS04415
RROmpR
309 156-309 827 nt · Forward (+)
MUY39_RS04420GCF_022900055#MUY39_RS04420
HKClassicCurrent focus
309 817-311 190 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433755#DW120_RS20375Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1877217
Simplified PFAM architecture for HKOC_1877217
PFAM domain coverage: 217 / 457 aa (47.5%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[161-210] | HisKA[237-300] | HATPase_c[347-449]
- Domain count: 3
- Matched identifier: HKOC_1877217
- Positioned domains: HAMP 161-210 ; HisKA 237-300 ; HATPase_c 347-449
Cluster members and taxonomy
Representative gene: GCF_003433755#DW120_RS20375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 931 881 · GCF_022900055
AssemblyASM2290005v1 · Contighaploid
Genome composition6 470 235 bp · 46,5% GCBlautia sp. NSJ-165
Signal transduction countsGenes 272 · HK 140 · RR 129CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key