1 Response_reg#1
5-117 aa · 113 aa · 22.3% of protein
Raw token
Response_reg:5:3.58e-26:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MUY39_RS04075
Response regulator, unclassified
Blautia sp. NSJ-165 · GCF_022900055
ClassRRTypeunclassifiedLength507 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022900055#MUY39_RS04075Stable P2CS identifier used across views.
GenomeGCF_022900055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 507 aa (29.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
466-503 aa · 38 aa · 7.5% of protein
Raw token
HTH_AraC:466:0.00000193:503:38:42- Raw architecture: Response_reg:5:3.58e-26:117:113:111#HTH_AraC:466:0.00000193:503:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022900055::NZ_JALIRN010000003.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span232443-235738Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMUY39_04075RefSeq proteinWP_033141500.1
Context group ID
GCF_022900055::NZ_JALIRN010000003.1::G00025Context members
MUY39_RS04070MUY39_RS04075
Partner locus tags
MUY39_RS04070MUY39_RS04075
Partner old locus tags
MUY39_04070MUY39_04075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033141500.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F6R0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F6R0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMUY39_RS04075Primary locus identifier stored in the genes table.
Old locus tagMUY39_04075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALIRN010000003.1Sequence record reported by the local genomic context database.
Genomic interval234 215-235 738 nt1 524 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span232 443-235 738 ntGCF_022900055::NZ_JALIRN010000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022900055::NZ_JALIRN010000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALIRN010000003.1All displayed genes belong to this local TCS context.
Neighborhood span232 443-235 738 nt3 296 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
232 443 nt235 738 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MUY39_RS04070GCF_022900055#MUY39_RS04070
HKClassic
232 443-234 221 nt · Forward (+)
MUY39_RS04075GCF_022900055#MUY39_RS04075
RRunclassifiedCurrent focus
234 215-235 738 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS07770Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0150227
Simplified PFAM architecture for RROC_0150227
PFAM domain coverage: 190 / 507 aa (37.5%)
1 aa507 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[426-503]
- Domain count: 2
- Matched identifier: RROC_0150227
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 426-503 ; HTH_18 426-503
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS07770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 931 881 · GCF_022900055
AssemblyASM2290005v1 · Contighaploid
Genome composition6 470 235 bp · 46,5% GCBlautia sp. NSJ-165
Signal transduction countsGenes 272 · HK 140 · RR 129CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key