1 Response_reg#1
4-107 aa · 104 aa · 45.6% of protein
Raw token
Response_reg:4:2.17e-31:107:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MUY39_RS02205
Response regulator OmpR family
Blautia sp. NSJ-165 · GCF_022900055
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022900055#MUY39_RS02205Stable P2CS identifier used across views.
GenomeGCF_022900055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 228 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-225 aa · 77 aa · 33.8% of protein
Raw token
Trans_reg_C:149:7.21e-19:225:77:77- Raw architecture: Response_reg:4:2.17e-31:107:105:111#Trans_reg_C:149:7.21e-19:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022900055::NZ_JALIRN010000002.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span137920-138606Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMUY39_02205RefSeq proteinWP_033139349.1
Context group ID
GCF_022900055::NZ_JALIRN010000002.1::G00015Context members
MUY39_RS02205
Partner locus tags
MUY39_RS02205
Partner old locus tags
MUY39_02205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033139349.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F9T1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F9T1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMUY39_RS02205Primary locus identifier stored in the genes table.
Old locus tagMUY39_02205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALIRN010000002.1Sequence record reported by the local genomic context database.
Genomic interval137 920-138 606 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span137 920-138 606 ntGCF_022900055::NZ_JALIRN010000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022900055::NZ_JALIRN010000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALIRN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span137 920-138 606 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
137 920 nt138 606 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MUY39_RS02205GCF_022900055#MUY39_RS02205
RROmpRCurrent focus
137 920-138 606 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS00580Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1314996
Simplified PFAM architecture for RROC_1314996
PFAM domain coverage: 181 / 228 aa (79.4%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-108] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1314996
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS00580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 931 881 · GCF_022900055
AssemblyASM2290005v1 · Contighaploid
Genome composition6 470 235 bp · 46,5% GCBlautia sp. NSJ-165
Signal transduction countsGenes 272 · HK 140 · RR 129CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key