1 dCache_1#1
109-251 aa · 143 aa · 23.4% of protein
Raw token
dCache_1:109:0.0000353:251:144:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MUY39_RS01665
Histidine kinase, Classic
Blautia sp. NSJ-165 · GCF_022900055
ClassHKTypeClassicLength612 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022900055#MUY39_RS01665Stable P2CS identifier used across views.
GenomeGCF_022900055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length612 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage406 / 612 aa (66.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa612 aa
Domain-by-domain annotation4 items
2 HAMP#2
297-365 aa · 69 aa · 11.3% of protein
Raw token
HAMP:297:0.0000000000103:365:69:693 His_kinase#3
387-466 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:387:5.42e-24:466:80:804 HATPase_c#4
483-596 aa · 114 aa · 18.6% of protein
Raw token
HATPase_c:483:0.000000000000668:596:114:109- Raw architecture: dCache_1:109:0.0000353:251:144:195#HAMP:297:0.0000000000103:365:69:69#His_kinase:387:5.42e-24:466:80:80#HATPase_c:483:0.000000000000668:596:114:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022900055::NZ_JALIRN010000002.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11958-14530Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMUY39_01665RefSeq proteinWP_103732562.1
Context group ID
GCF_022900055::NZ_JALIRN010000002.1::G00013Context members
MUY39_RS01665MUY39_RS01670
Partner locus tags
MUY39_RS01665MUY39_RS01670
Partner old locus tags
MUY39_01665MUY39_01670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103732562.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DIH6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DIH6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMUY39_RS01665Primary locus identifier stored in the genes table.
Old locus tagMUY39_01665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JALIRN010000002.1Sequence record reported by the local genomic context database.
Genomic interval11 958-13 796 nt1 839 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 958-14 530 ntGCF_022900055::NZ_JALIRN010000002.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022900055::NZ_JALIRN010000002.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JALIRN010000002.1All displayed genes belong to this local TCS context.
Neighborhood span11 958-14 530 nt2 573 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 958 nt14 530 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MUY39_RS01665GCF_022900055#MUY39_RS01665
HKClassicCurrent focus
11 958-13 796 nt · Forward (+)
MUY39_RS01670GCF_022900055#MUY39_RS01670
RRunclassified
13 793-14 530 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS01105Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0998074
Simplified PFAM architecture for HKOC_0998074
PFAM domain coverage: 242 / 612 aa (39.5%)
1 aa612 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[313-365] | His_kinase[387-464] | HATPase_c[485-595]
- Domain count: 3
- Matched identifier: HKOC_0998074
- Positioned domains: HAMP 313-365 ; His_kinase 387-464 ; HATPase_c 485-595
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS01105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 931 881 · GCF_022900055
AssemblyASM2290005v1 · Contighaploid
Genome composition6 470 235 bp · 46,5% GCBlautia sp. NSJ-165
Signal transduction countsGenes 272 · HK 140 · RR 129CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key