Gene detail

MT990_RS01890

Histidine kinase, Classic

Bifidobacterium longum subsp. infantis · GCF_022819225

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength459 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_022819225#MT990_RS01890Stable P2CS identifier used across views.

GenomeGCF_022819225Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Selected clusterHKOC_1852553Run 6 · 1 sequences · id 100% · cov 80% · representative

External referencesWP_243821971.1 · MIST4 MT990_RS01890RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length459 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage178 / 459 aa (38.8%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.

Biotite-like domain view for MT990_RS01890

Domain-by-domain annotation2 items

1 HisKA#1

180-245 aa · 66 aa · 14.4% of protein

Raw tokenHisKA:180:0.0000000000368:245:66:64

2 HATPase_c#2

307-418 aa · 112 aa · 24.4% of protein

Raw tokenHATPase_c:307:4.18e-29:418:112:109

Raw architecture: HisKA:180:0.0000000000368:245:66:64#HATPase_c:307:4.18e-29:418:112:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_022819225::NZ_CP094658.1::G00003

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span414546-416813Genomic interval covered by the local TCS group.

Identifiers

Old locus tagMT990_01890RefSeq proteinWP_243821971.1

Context group IDGCF_022819225::NZ_CP094658.1::G00003

Context members

MT990_RS01890MT990_RS01895

Partner locus tags

MT990_RS01890MT990_RS01895

Partner old locus tags

MT990_01890MT990_01895

Partner protein IDs

WP_243821971.1 WP_029680021.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_243821971.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagMT990_RS01890Primary locus identifier stored in the genes table.

Old locus tagMT990_01890Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CP094658.1Sequence record reported by the local genomic context database.

Genomic interval414 546-415 925 nt1 380 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span414 546-416 813 ntGCF_022819225::NZ_CP094658.1::G00003

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_022819225::NZ_CP094658.1::G00003

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CP094658.1All displayed genes belong to this local TCS context.

Neighborhood span414 546-416 813 nt2 268 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

414 546 nt416 813 nt

+-MT990_RS01890 MT990_RS01895

Neighborhood gene cards

2 genes in the current local neighborhood.

MT990_RS01890GCF_022819225#MT990_RS01890

HKClassicCurrent focus

414 546-415 925 nt · Forward (+)

Old locus MT990_01890RefSeq WP_243821971.1

Open current gene

MT990_RS01895GCF_022819225#MT990_RS01895

RROmpR

416 109-416 813 nt · Forward (+)

Old locus MT990_01895RefSeq WP_029680021.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1852553HK

Run 61 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_1852553Run 6 · HK · 1 sequences

Representative sequenceGCF_022819225#MT990_RS01890The current gene is the representative for this cluster.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_1852553

Simplified PFAM architecture for HKOC_1852553

PFAM domain coverage: 176 / 459 aa (38.3%)

1 aa459 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[180-244] | HATPase_c[308-418]
Domain count: 2
Matched identifier: HKOC_1852553
Positioned domains: HisKA 180-244 ; HATPase_c 308-418

Cluster members and taxonomy

Representative gene: GCF_022819225#MT990_RS01890

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 682 · GCF_022819225

AssemblyASM2281922v1 · Complete Genomehaploid

Genome composition2 776 348 bp · 60,0% GCBifidobacterium longum subsp. infantis

Signal transduction countsGenes 43 · HK 15 · RR 23CheA 0 · PP 5

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium

Lineage path7 lineage nodes

1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key