1 HisKA_3#1
92-156 aa · 65 aa · 20.0% of protein
Raw token
HisKA_3:92:0.0000000000000312:156:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q0A80_RS04975
Histidine kinase, Classic
Bifidobacterium sp. · GCF_022731995
ClassHKTypeClassicLength325 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022731995#Q0A80_RS04975Stable P2CS identifier used across views.
GenomeGCF_022731995Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length325 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 325 aa (53.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa325 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
202-311 aa · 110 aa · 33.8% of protein
Raw token
HATPase_c:202:0.00000000787:311:111:109- Raw architecture: HisKA_3:92:0.0000000000000312:156:65:68#HATPase_c:202:0.00000000787:311:111:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022731995::NZ_JAIJVJ010000008.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22024-23660Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022731995::NZ_JAIJVJ010000008.1::G00005Context members
Q0A80_RS04975Q0A80_RS04980
Partner locus tags
Q0A80_RS04975Q0A80_RS04980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236824455.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ0A80_RS04975Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAIJVJ010000008.1Sequence record reported by the local genomic context database.
Genomic interval22 024-23 001 nt978 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 024-23 660 ntGCF_022731995::NZ_JAIJVJ010000008.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022731995::NZ_JAIJVJ010000008.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIJVJ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span22 024-23 660 nt1 637 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 024 nt23 660 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Q0A80_RS04975GCF_022731995#Q0A80_RS04975
HKClassicCurrent focus
22 024-23 001 nt · Forward (+)
Q0A80_RS04980GCF_022731995#Q0A80_RS04980
RRNarL
22 998-23 660 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002742445#CE153_RS03815Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2864119
Simplified PFAM architecture for HKOC_2864119
PFAM domain coverage: 66 / 325 aa (20.3%)
1 aa325 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[92-157]
- Domain count: 1
- Matched identifier: HKOC_2864119
- Positioned domains: HisKA_3 92-157
Cluster members and taxonomy
Representative gene: GCF_002742445#CE153_RS03815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 41 200 · GCF_022731995
AssemblyASM2273199v1 · Contighaploid
Genome composition2 087 872 bp · 56,0% GCBifidobacterium sp.
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key