1 Response_reg#1
13-126 aa · 114 aa · 52.3% of protein
Raw token
Response_reg:13:0.00000000000000136:126:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q0A80_RS03775
Response regulator NarL family
Bifidobacterium sp. · GCF_022731995
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022731995#Q0A80_RS03775Stable P2CS identifier used across views.
GenomeGCF_022731995Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 218 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
156-211 aa · 56 aa · 25.7% of protein
Raw token
HTH_LUXR:156:1.81e-17:211:56:58- Raw architecture: Response_reg:13:0.00000000000000136:126:115:111#HTH_LUXR:156:1.81e-17:211:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022731995::NZ_JAIJVJ010000005.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span81995-82651Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022731995::NZ_JAIJVJ010000005.1::G00013Context members
Q0A80_RS03775
Partner locus tags
Q0A80_RS03775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_099595701.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ0A80_RS03775Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAIJVJ010000005.1Sequence record reported by the local genomic context database.
Genomic interval81 995-82 651 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 995-82 651 ntGCF_022731995::NZ_JAIJVJ010000005.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022731995::NZ_JAIJVJ010000005.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIJVJ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span81 995-82 651 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 995 nt82 651 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Q0A80_RS03775GCF_022731995#Q0A80_RS03775
RRNarLCurrent focus
81 995-82 651 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002742445#CE153_RS07185Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1818383
Simplified PFAM architecture for RROC_1818383
PFAM domain coverage: 167 / 218 aa (76.6%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[13-125] | GerE[157-210]
- Domain count: 2
- Matched identifier: RROC_1818383
- Positioned domains: Response_reg 13-125 ; Response_reg 13-125 ; GerE 157-210 ; GerE 157-210
Cluster members and taxonomy
Representative gene: GCF_002742445#CE153_RS07185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 41 200 · GCF_022731995
AssemblyASM2273199v1 · Contighaploid
Genome composition2 087 872 bp · 56,0% GCBifidobacterium sp.
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key