1 HisKA_3#1
171-230 aa · 60 aa · 15.3% of protein
Raw token
HisKA_3:171:0.00000000000013:230:62:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q0A30_RS01600
Histidine kinase, Classic
Bifidobacterium sp. · GCF_022723235
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022723235#Q0A30_RS01600Stable P2CS identifier used across views.
GenomeGCF_022723235Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 392 aa (36.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
274-357 aa · 84 aa · 21.4% of protein
Raw token
HATPase_c:274:0.000000124:357:96:109- Raw architecture: HisKA_3:171:0.00000000000013:230:62:68#HATPase_c:274:0.000000124:357:96:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022723235::NZ_JAIIPD010000005.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39510-41377Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022723235::NZ_JAIIPD010000005.1::G00009Context members
Q0A30_RS01600Q0A30_RS01605
Partner locus tags
Q0A30_RS01600Q0A30_RS01605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_154034999.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ0A30_RS01600Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAIIPD010000005.1Sequence record reported by the local genomic context database.
Genomic interval39 510-40 688 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 510-41 377 ntGCF_022723235::NZ_JAIIPD010000005.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022723235::NZ_JAIIPD010000005.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIIPD010000005.1All displayed genes belong to this local TCS context.
Neighborhood span39 510-41 377 nt1 868 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 510 nt41 377 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Q0A30_RS01600GCF_022723235#Q0A30_RS01600
HKClassicCurrent focus
39 510-40 688 nt · Forward (+)
Q0A30_RS01605GCF_022723235#Q0A30_RS01605
RRNarL
40 682-41 377 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022723235#Q0A30_RS01600The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2514678
Simplified PFAM architecture for HKOC_2514678
PFAM domain coverage: 60 / 392 aa (15.3%)
1 aa392 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[171-230]
- Domain count: 1
- Matched identifier: HKOC_2514678
- Positioned domains: HisKA_3 171-230
Cluster members and taxonomy
Representative gene: GCF_022723235#Q0A30_RS01600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 41 200 · GCF_022723235
AssemblyASM2272323v1 · Contighaploid
Genome composition2 277 430 bp · 56,0% GCBifidobacterium sp.
Signal transduction countsGenes 27 · HK 10 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key