1 Response_reg#1
4-114 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:4:4.26e-29:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LMY38_RS10010
Response regulator OmpR family
Bifidobacterium longum · GCF_022701235
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022701235#LMY38_RS10010Stable P2CS identifier used across views.
GenomeGCF_022701235Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 224 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-223 aa · 71 aa · 31.7% of protein
Raw token
Trans_reg_C:153:2.75e-16:223:75:77- Raw architecture: Response_reg:4:4.26e-29:114:111:111#Trans_reg_C:153:2.75e-16:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022701235::NZ_CP090790.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2313473-2315640Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLMY38_10010RefSeq proteinWP_227484923.1
Context group ID
GCF_022701235::NZ_CP090790.1::G00013Context members
LMY38_RS10005LMY38_RS10010
Partner locus tags
LMY38_RS10005LMY38_RS10010
Partner old locus tags
LMY38_10005LMY38_10010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_227484923.1Primary protein accession used for annex mappings.
UniProt accessionA0A087BAI2Primary UniProt accession resolved in the annex database.
UniProt IDA0A087BAI2_BIFLNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLMY38_RS10010Primary locus identifier stored in the genes table.
Old locus tagLMY38_10010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP090790.1Sequence record reported by the local genomic context database.
Genomic interval2 314 966-2 315 640 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 313 473-2 315 640 ntGCF_022701235::NZ_CP090790.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022701235::NZ_CP090790.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP090790.1All displayed genes belong to this local TCS context.
Neighborhood span2 313 473-2 315 640 nt2 168 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 313 473 nt2 315 640 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LMY38_RS10005GCF_022701235#LMY38_RS10005
HKClassic
2 313 473-2 314 969 nt · Reverse (-)
LMY38_RS10010GCF_022701235#LMY38_RS10010
RROmpRCurrent focus
2 314 966-2 315 640 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033657985#RS908_RS06105Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1037058
Simplified PFAM architecture for RROC_1037058
PFAM domain coverage: 182 / 235 aa (77.4%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-125] | Trans_reg_C[164-234]
- Domain count: 2
- Matched identifier: RROC_1037058
- Positioned domains: Response_reg 15-125 ; Trans_reg_C 164-234
Cluster members and taxonomy
Representative gene: GCF_033657985#RS908_RS06105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_022701235
AssemblyASM2270123v1 · Complete Genomehaploid
Genome composition2 417 164 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key