1 H_kinase_N#1
9-145 aa · 137 aa · 27.7% of protein
Raw token
H_kinase_N:9:2.18e-51:145:138:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LMY38_RS01610
Histidine kinase, Classic
Bifidobacterium longum · GCF_022701235
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022701235#LMY38_RS01610Stable P2CS identifier used across views.
GenomeGCF_022701235Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage414 / 495 aa (83.6%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation4 items
2 PAS_4#2
175-278 aa · 104 aa · 21.0% of protein
Raw token
PAS_4:175:0.0000000024:278:109:1103 HisKA_2#3
292-361 aa · 70 aa · 14.1% of protein
Raw token
HisKA_2:292:2.64e-30:361:71:764 HATPase_c#4
388-490 aa · 103 aa · 20.8% of protein
Raw token
HATPase_c:388:0.00000000000000226:490:112:109- Raw architecture: H_kinase_N:9:2.18e-51:145:138:139#PAS_4:175:0.0000000024:278:109:110#HisKA_2:292:2.64e-30:361:71:76#HATPase_c:388:0.00000000000000226:490:112:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022701235::NZ_CP090790.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span339622-341109Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLMY38_01610RefSeq proteinWP_032683816.1
Context group ID
GCF_022701235::NZ_CP090790.1::G00006Context members
LMY38_RS01610
Partner locus tags
LMY38_RS01610
Partner old locus tags
LMY38_01610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032683816.1Primary protein accession used for annex mappings.
UniProt accessionA0A087BFM7Primary UniProt accession resolved in the annex database.
UniProt IDA0A087BFM7_BIFLNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLMY38_RS01610Primary locus identifier stored in the genes table.
Old locus tagLMY38_01610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP090790.1Sequence record reported by the local genomic context database.
Genomic interval339 622-341 109 nt1 488 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span339 622-341 109 ntGCF_022701235::NZ_CP090790.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022701235::NZ_CP090790.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP090790.1All displayed genes belong to this local TCS context.
Neighborhood span339 622-341 109 nt1 488 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
339 622 nt341 109 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LMY38_RS01610GCF_022701235#LMY38_RS01610
HKClassicCurrent focus
339 622-341 109 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741625#BLSS_RS03020Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504662
Simplified PFAM architecture for HKOC_1504662
PFAM domain coverage: 416 / 495 aa (84.0%)
1 aa495 aa
GAF_PdtaSPAS_4HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[5-141] | PAS_4[173-277] | HisKA_2[292-363] | HATPase_c[388-489]
- Domain count: 4
- Matched identifier: HKOC_1504662
- Positioned domains: GAF_PdtaS 5-141 ; PAS_4 173-277 ; HisKA_2 292-363 ; HATPase_c 388-489
Cluster members and taxonomy
Representative gene: GCF_000741625#BLSS_RS03020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_022701235
AssemblyASM2270123v1 · Complete Genomehaploid
Genome composition2 417 164 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key