1 Response_reg#1
9-133 aa · 125 aa · 50.4% of protein
Raw token
Response_reg:9:3.09e-28:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LMY38_RS01145
Response regulator NarL family
Bifidobacterium longum · GCF_022701235
ClassRRTypeNarLLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022701235#LMY38_RS01145Stable P2CS identifier used across views.
GenomeGCF_022701235Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 248 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
185-242 aa · 58 aa · 23.4% of protein
Raw token
HTH_LUXR:185:1.64e-23:242:58:58- Raw architecture: Response_reg:9:3.09e-28:133:125:111#HTH_LUXR:185:1.64e-23:242:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022701235::NZ_CP090790.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span228013-231444Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLMY38_01145RefSeq proteinWP_032683866.1
Context group ID
GCF_022701235::NZ_CP090790.1::G00003Context members
LMY38_RS01140LMY38_RS01145
Partner locus tags
LMY38_RS01140LMY38_RS01145
Partner old locus tags
LMY38_01140LMY38_01145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032683866.1Primary protein accession used for annex mappings.
UniProt accessionA0A087BFW1Primary UniProt accession resolved in the annex database.
UniProt IDA0A087BFW1_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLMY38_RS01145Primary locus identifier stored in the genes table.
Old locus tagLMY38_01145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP090790.1Sequence record reported by the local genomic context database.
Genomic interval230 698-231 444 nt747 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span228 013-231 444 ntGCF_022701235::NZ_CP090790.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022701235::NZ_CP090790.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP090790.1All displayed genes belong to this local TCS context.
Neighborhood span228 013-231 444 nt3 432 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
228 013 nt231 444 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LMY38_RS01140GCF_022701235#LMY38_RS01140
HKClassic
228 013-230 622 nt · Forward (+)
LMY38_RS01145GCF_022701235#LMY38_RS01145
RRNarLCurrent focus
230 698-231 444 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741625#BLSS_RS02580Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0744212
Simplified PFAM architecture for RROC_0744212
PFAM domain coverage: 180 / 248 aa (72.6%)
1 aa248 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[187-242]
- Domain count: 2
- Matched identifier: RROC_0744212
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 187-242 ; GerE 187-242
Cluster members and taxonomy
Representative gene: GCF_000741625#BLSS_RS02580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_022701235
AssemblyASM2270123v1 · Complete Genomehaploid
Genome composition2 417 164 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key