1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:1.1e-27:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MKI56_RS04495
Response regulator OmpR family
Enterococcus faecalis · GCF_022691465
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022691465#MKI56_RS04495Stable P2CS identifier used across views.
GenomeGCF_022691465Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-222 aa · 75 aa · 33.5% of protein
Raw token
Trans_reg_C:148:1.64e-30:222:76:77- Raw architecture: Response_reg:4:1.1e-27:113:111:111#Trans_reg_C:148:1.64e-30:222:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022691465::NZ_CP092574.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span885199-886912Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMKI56_000890RefSeq proteinWP_242427469.1
Context group ID
GCF_022691465::NZ_CP092574.1::G00003Context members
MKI56_RS04495MKI56_RS04500
Partner locus tags
MKI56_RS04495MKI56_RS04500
Partner old locus tags
MKI56_000890MKI56_000891
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242427469.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMKI56_RS04495Primary locus identifier stored in the genes table.
Old locus tagMKI56_000890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP092574.1Sequence record reported by the local genomic context database.
Genomic interval885 199-885 873 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span885 199-886 912 ntGCF_022691465::NZ_CP092574.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022691465::NZ_CP092574.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP092574.1All displayed genes belong to this local TCS context.
Neighborhood span885 199-886 912 nt1 714 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
885 199 nt886 912 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MKI56_RS04495GCF_022691465#MKI56_RS04495
RROmpRCurrent focus
885 199-885 873 nt · Forward (+)
MKI56_RS04500GCF_022691465#MKI56_RS04500
HKClassic
885 887-886 912 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022691465#MKI56_RS04495The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1559283
Simplified PFAM architecture for RROC_1559283
PFAM domain coverage: 185 / 224 aa (82.6%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1559283
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_022691465#MKI56_RS04495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_022691465
AssemblyASM2269146v1 · Complete Genomehaploid
Genome composition3 100 993 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 25 · HK 11 · RR 14CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key