1 HisKA#1
258-324 aa · 67 aa · 14.0% of protein
Raw token
HisKA:258:0.000000000592:324:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MN033_RS23495
Histidine kinase, Classic
Bacillus nitratireducens · GCF_022691145
ClassHKTypeClassicLength480 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022691145#MN033_RS23495Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length480 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 480 aa (37.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa480 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
369-479 aa · 111 aa · 23.1% of protein
Raw token
HATPase_c:369:2.91e-20:479:112:109- Raw architecture: HisKA:258:0.000000000592:324:67:64#HATPase_c:369:2.91e-20:479:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022691145::NZ_CP093844.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4480278-4482363Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMN033_23495RefSeq proteinWP_000201927.1
Context group ID
GCF_022691145::NZ_CP093844.1::G00051Context members
MN033_RS23490MN033_RS23495
Partner locus tags
MN033_RS23490MN033_RS23495
Partner old locus tags
MN033_23490MN033_23495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_000201927.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMN033_RS23495Primary locus identifier stored in the genes table.
Old locus tagMN033_23495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP093844.1Sequence record reported by the local genomic context database.
Genomic interval4 480 921-4 482 363 nt1 443 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 480 278-4 482 363 ntGCF_022691145::NZ_CP093844.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022691145::NZ_CP093844.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP093844.1All displayed genes belong to this local TCS context.
Neighborhood span4 480 278-4 482 363 nt2 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 480 278 nt4 482 363 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MN033_RS23490GCF_022691145#MN033_RS23490
RROmpR
4 480 278-4 480 943 nt · Forward (+)
MN033_RS23495GCF_022691145#MN033_RS23495
HKClassicCurrent focus
4 480 921-4 482 363 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007681065#FS724_RS15415Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1622098
Simplified PFAM architecture for HKOC_1622098
PFAM domain coverage: 174 / 480 aa (36.3%)
1 aa480 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[259-323] | HATPase_c[370-478]
- Domain count: 2
- Matched identifier: HKOC_1622098
- Positioned domains: HisKA 259-323 ; HATPase_c 370-478
Cluster members and taxonomy
Representative gene: GCF_007681065#FS724_RS15415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_022691145
AssemblyASM2269114v1 · Chromosomehaploid
Genome composition5 056 959 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 99 · HK 55 · RR 44CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key