1 HAMP#1
311-378 aa · 68 aa · 11.0% of protein
Raw token
HAMP:311:0.000000000000135:378:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MN033_RS22270
Histidine kinase, Classic
Bacillus nitratireducens · GCF_022691145
ClassHKTypeClassicLength617 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022691145#MN033_RS22270Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length617 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 617 aa (39.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa617 aa
Domain-by-domain annotation3 items
2 HisKA#2
398-462 aa · 65 aa · 10.5% of protein
Raw token
HisKA:398:0.0000000000000434:462:65:643 HATPase_c#3
506-616 aa · 111 aa · 18.0% of protein
Raw token
HATPase_c:506:2.26e-22:616:112:109- Raw architecture: HAMP:311:0.000000000000135:378:68:69#HisKA:398:0.0000000000000434:462:65:64#HATPase_c:506:2.26e-22:616:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022691145::NZ_CP093844.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4273191-4275730Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMN033_22270RefSeq proteinWP_044737479.1
Context group ID
GCF_022691145::NZ_CP093844.1::G00048Context members
MN033_RS22270MN033_RS22275
Partner locus tags
MN033_RS22270MN033_RS22275
Partner old locus tags
MN033_22270MN033_22275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044737479.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMN033_RS22270Primary locus identifier stored in the genes table.
Old locus tagMN033_22270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP093844.1Sequence record reported by the local genomic context database.
Genomic interval4 273 191-4 275 044 nt1 854 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 273 191-4 275 730 ntGCF_022691145::NZ_CP093844.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022691145::NZ_CP093844.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP093844.1All displayed genes belong to this local TCS context.
Neighborhood span4 273 191-4 275 730 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 273 191 nt4 275 730 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MN033_RS22270GCF_022691145#MN033_RS22270
HKClassicCurrent focus
4 273 191-4 275 044 nt · Reverse (-)
MN033_RS22275GCF_022691145#MN033_RS22275
RROmpR
4 275 041-4 275 730 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022691145#MN033_RS22270The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0983716
Simplified PFAM architecture for HKOC_0983716
PFAM domain coverage: 226 / 617 aa (36.6%)
1 aa617 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[329-378] | HisKA[398-462] | HATPase_c[506-616]
- Domain count: 3
- Matched identifier: HKOC_0983716
- Positioned domains: HAMP 329-378 ; HisKA 398-462 ; HATPase_c 506-616
Cluster members and taxonomy
Representative gene: GCF_022691145#MN033_RS22270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_022691145
AssemblyASM2269114v1 · Chromosomehaploid
Genome composition5 056 959 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 99 · HK 55 · RR 44CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key