1 PocR#1
7-75 aa · 69 aa · 11.7% of protein
Raw token
PocR:7:0.000000826:75:102:162P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MN033_RS15375
Histidine kinase, Classic
Bacillus nitratireducens · GCF_022691145
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022691145#MN033_RS15375Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PocRPASPAS_4HisKAHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage412 / 589 aa (69.9%)Merged over positioned domains only.
Domain description1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation5 items
2 PAS#2
131-204 aa · 74 aa · 12.6% of protein
Raw token
PAS:131:0.000000269:204:85:1133 PAS_4#3
248-350 aa · 103 aa · 17.5% of protein
Raw token
PAS_4:248:0.000000000000526:350:108:1104 HisKA#4
365-427 aa · 63 aa · 10.7% of protein
Raw token
HisKA:365:0.000000000000794:427:63:645 HATPase_c#5
472-574 aa · 103 aa · 17.5% of protein
Raw token
HATPase_c:472:5.5e-25:574:106:109- Raw architecture: PocR:7:0.000000826:75:102:162#PAS:131:0.000000269:204:85:113#PAS_4:248:0.000000000000526:350:108:110#HisKA:365:0.000000000000794:427:63:64#HATPase_c:472:5.5e-25:574:106:109
- Domain description: 1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022691145::NZ_CP093844.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2955996-2957765Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMN033_15375RefSeq proteinWP_242399187.1
Context group ID
GCF_022691145::NZ_CP093844.1::G00038Context members
MN033_RS15375
Partner locus tags
MN033_RS15375
Partner old locus tags
MN033_15375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242399187.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMN033_RS15375Primary locus identifier stored in the genes table.
Old locus tagMN033_15375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP093844.1Sequence record reported by the local genomic context database.
Genomic interval2 955 996-2 957 765 nt1 770 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 955 996-2 957 765 ntGCF_022691145::NZ_CP093844.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022691145::NZ_CP093844.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP093844.1All displayed genes belong to this local TCS context.
Neighborhood span2 955 996-2 957 765 nt1 770 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 955 996 nt2 957 765 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MN033_RS15375GCF_022691145#MN033_RS15375
HKClassicCurrent focus
2 955 996-2 957 765 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022691145#MN033_RS15375The current gene is the representative for this cluster.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1117710
Simplified PFAM architecture for HKOC_1117710
PFAM domain coverage: 319 / 589 aa (54.2%)
1 aa589 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[131-181] | PAS_4[248-350] | HisKA[366-426] | HATPase_c[472-575]
- Domain count: 4
- Matched identifier: HKOC_1117710
- Positioned domains: PAS 131-181 ; PAS_4 248-350 ; HisKA 366-426 ; HATPase_c 472-575
Cluster members and taxonomy
Representative gene: GCF_022691145#MN033_RS15375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_022691145
AssemblyASM2269114v1 · Chromosomehaploid
Genome composition5 056 959 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 99 · HK 55 · RR 44CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key