1 Response_reg#1
4-115 aa · 112 aa · 49.6% of protein
Raw token
Response_reg:4:1.09e-32:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MN033_RS13985
Response regulator OmpR family
Bacillus nitratireducens · GCF_022691145
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022691145#MN033_RS13985Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 226 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:149:2.01e-26:222:77:77- Raw architecture: Response_reg:4:1.09e-32:115:113:111#Trans_reg_C:149:2.01e-26:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022691145::NZ_CP093844.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2695007-2697531Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMN033_13985RefSeq proteinWP_242399047.1
Context group ID
GCF_022691145::NZ_CP093844.1::G00033Context members
MN033_RS13980MN033_RS13985
Partner locus tags
MN033_RS13980MN033_RS13985
Partner old locus tags
MN033_13980MN033_13985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242399047.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMN033_RS13985Primary locus identifier stored in the genes table.
Old locus tagMN033_13985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP093844.1Sequence record reported by the local genomic context database.
Genomic interval2 696 851-2 697 531 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 695 007-2 697 531 ntGCF_022691145::NZ_CP093844.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022691145::NZ_CP093844.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP093844.1All displayed genes belong to this local TCS context.
Neighborhood span2 695 007-2 697 531 nt2 525 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 695 007 nt2 697 531 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MN033_RS13980GCF_022691145#MN033_RS13980
HKClassic
2 695 007-2 696 851 nt · Reverse (-)
MN033_RS13985GCF_022691145#MN033_RS13985
RROmpRCurrent focus
2 696 851-2 697 531 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022691145#MN033_RS13985The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1436167
Simplified PFAM architecture for RROC_1436167
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1436167
- Positioned domains: Response_reg 4-114 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_022691145#MN033_RS13985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_022691145
AssemblyASM2269114v1 · Chromosomehaploid
Genome composition5 056 959 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 99 · HK 55 · RR 44CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key