1 HAMP#1
55-122 aa · 68 aa · 19.8% of protein
Raw token
HAMP:55:0.0000000475:122:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MN033_RS13690
Histidine kinase, Classic
Bacillus nitratireducens · GCF_022691145
ClassHKTypeClassicLength344 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022691145#MN033_RS13690Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length344 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage204 / 344 aa (59.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa344 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-190 aa · 54 aa · 15.7% of protein
Raw token
HisKA:137:0.00000000628:190:54:643 HATPase_c#3
246-327 aa · 82 aa · 23.8% of protein
Raw token
HATPase_c:246:0.0000000000183:327:103:109- Raw architecture: HAMP:55:0.0000000475:122:68:69#HisKA:137:0.00000000628:190:54:64#HATPase_c:246:0.0000000000183:327:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022691145::NZ_CP093844.1::G00032
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2640115-2641149Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMN033_13690RefSeq proteinWP_242399013.1
Context group ID
GCF_022691145::NZ_CP093844.1::G00032Context members
MN033_RS13690
Partner locus tags
MN033_RS13690
Partner old locus tags
MN033_13690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242399013.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMN033_RS13690Primary locus identifier stored in the genes table.
Old locus tagMN033_13690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP093844.1Sequence record reported by the local genomic context database.
Genomic interval2 640 115-2 641 149 nt1 035 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 640 115-2 641 149 ntGCF_022691145::NZ_CP093844.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022691145::NZ_CP093844.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP093844.1All displayed genes belong to this local TCS context.
Neighborhood span2 640 115-2 641 149 nt1 035 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 640 115 nt2 641 149 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MN033_RS13690GCF_022691145#MN033_RS13690
HKClassicCurrent focus
2 640 115-2 641 149 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022691145#MN033_RS13690The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2825704
Simplified PFAM architecture for HKOC_2825704
PFAM domain coverage: 134 / 344 aa (39.0%)
1 aa344 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[137-190] | HATPase_c[247-326]
- Domain count: 2
- Matched identifier: HKOC_2825704
- Positioned domains: HisKA 137-190 ; HATPase_c 247-326
Cluster members and taxonomy
Representative gene: GCF_022691145#MN033_RS13690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_022691145
AssemblyASM2269114v1 · Chromosomehaploid
Genome composition5 056 959 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 99 · HK 55 · RR 44CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key