1 Response_reg#1
7-119 aa · 113 aa · 49.1% of protein
Raw token
Response_reg:7:4.28e-28:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MN033_RS01230
Response regulator, unclassified
Bacillus nitratireducens · GCF_022691145
ClassRRTypeunclassifiedLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022691145#MN033_RS01230Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 230 aa (49.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:7:4.28e-28:119:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022691145::NZ_CP093844.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span257595-258287Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMN033_01230RefSeq proteinWP_001002006.1
Context group ID
GCF_022691145::NZ_CP093844.1::G00004Context members
MN033_RS01230
Partner locus tags
MN033_RS01230
Partner old locus tags
MN033_01230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001002006.1Primary protein accession used for annex mappings.
UniProt accessionA0ABU6PC72Primary UniProt accession resolved in the annex database.
UniProt IDA0ABU6PC72_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMN033_RS01230Primary locus identifier stored in the genes table.
Old locus tagMN033_01230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP093844.1Sequence record reported by the local genomic context database.
Genomic interval257 595-258 287 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span257 595-258 287 ntGCF_022691145::NZ_CP093844.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022691145::NZ_CP093844.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP093844.1All displayed genes belong to this local TCS context.
Neighborhood span257 595-258 287 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
257 595 nt258 287 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MN033_RS01230GCF_022691145#MN033_RS01230
RRunclassifiedCurrent focus
257 595-258 287 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS27435Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1207108
Simplified PFAM architecture for RROC_1207108
PFAM domain coverage: 161 / 230 aa (70.0%)
1 aa230 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[7-118] | HTH_64[178-226]
- Domain count: 2
- Matched identifier: RROC_1207108
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; HTH_64 178-226 ; HTH_64 178-226
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS27435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_022691145
AssemblyASM2269114v1 · Chromosomehaploid
Genome composition5 056 959 bp · 35,5% GCBacillus nitratireducens
Signal transduction countsGenes 99 · HK 55 · RR 44CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key