1 Response_reg#1
5-111 aa · 107 aa · 47.1% of protein
Raw token
Response_reg:5:2.65e-32:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MR155_RS00425
Response regulator OmpR family
Bacillus cereus group sp. BfR-BA-01331 · GCF_022663915
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022663915#MR155_RS00425Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 227 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-225 aa · 77 aa · 33.9% of protein
Raw token
Trans_reg_C:149:1.83e-29:225:77:77- Raw architecture: Response_reg:5:2.65e-32:111:109:111#Trans_reg_C:149:1.83e-29:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022663915::NZ_JAKUGJ010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span90378-92506Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022663915::NZ_JAKUGJ010000001.1::G00001Context members
MR155_RS00425MR155_RS00430
Partner locus tags
MR155_RS00425MR155_RS00430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242307549.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMR155_RS00425Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAKUGJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval90 378-91 061 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span90 378-92 506 ntGCF_022663915::NZ_JAKUGJ010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022663915::NZ_JAKUGJ010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKUGJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span90 378-92 506 nt2 129 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 378 nt92 506 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MR155_RS00425GCF_022663915#MR155_RS00425
RROmpRCurrent focus
90 378-91 061 nt · Forward (+)
MR155_RS00430GCF_022663915#MR155_RS00430
HKClassic
91 049-92 506 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022663915#MR155_RS00425The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1381097
Simplified PFAM architecture for RROC_1381097
PFAM domain coverage: 183 / 227 aa (80.6%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[149-224]
- Domain count: 2
- Matched identifier: RROC_1381097
- Positioned domains: Response_reg 5-111 ; Trans_reg_C 149-224
Cluster members and taxonomy
Representative gene: GCF_022663915#MR155_RS00425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 920 307 · GCF_022663915
AssemblyASM2266391v1 · Contighaploid
Genome composition6 140 474 bp · 35,0% GCBacillus cereus group sp. BfR-BA-01331
Signal transduction countsGenes 126 · HK 69 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key