1 HAMP#1
267-335 aa · 69 aa · 10.4% of protein
Raw token
HAMP:267:0.0000000000000011:335:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LF912_RS08130
Histidine kinase, Classic
Bifidobacterium longum · GCF_022496375
ClassHKTypeClassicLength663 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022496375#LF912_RS08130Stable P2CS identifier used across views.
GenomeGCF_022496375Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length663 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 663 aa (43.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa663 aa
Domain-by-domain annotation3 items
2 HisKA#2
347-416 aa · 70 aa · 10.6% of protein
Raw token
HisKA:347:1.35e-17:416:70:643 HATPase_c#3
480-627 aa · 148 aa · 22.3% of protein
Raw token
HATPase_c:480:1.05e-21:627:148:109- Raw architecture: HAMP:267:0.0000000000000011:335:69:69#HisKA:347:1.35e-17:416:70:64#HATPase_c:480:1.05e-21:627:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022496375::NZ_JAIZGW010000006.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span151059-153811Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLF912_08180RefSeq proteinWP_240835904.1
Context group ID
GCF_022496375::NZ_JAIZGW010000006.1::G00012Context members
LF912_RS08130LF912_RS08135
Partner locus tags
LF912_RS08130LF912_RS08135
Partner old locus tags
LF912_08180LF912_08185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_240835904.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLF912_RS08130Primary locus identifier stored in the genes table.
Old locus tagLF912_08180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIZGW010000006.1Sequence record reported by the local genomic context database.
Genomic interval151 059-153 050 nt1 992 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span151 059-153 811 ntGCF_022496375::NZ_JAIZGW010000006.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022496375::NZ_JAIZGW010000006.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIZGW010000006.1All displayed genes belong to this local TCS context.
Neighborhood span151 059-153 811 nt2 753 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
151 059 nt153 811 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LF912_RS08130GCF_022496375#LF912_RS08130
HKClassicCurrent focus
151 059-153 050 nt · Reverse (-)
LF912_RS08135GCF_022496375#LF912_RS08135
RROmpR
153 080-153 811 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022496375#LF912_RS08130The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0865805
Simplified PFAM architecture for HKOC_0865805
PFAM domain coverage: 268 / 663 aa (40.4%)
1 aa663 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[284-335] | HisKA[348-416] | HATPase_c[480-626]
- Domain count: 3
- Matched identifier: HKOC_0865805
- Positioned domains: HAMP 284-335 ; HisKA 348-416 ; HATPase_c 480-626
Cluster members and taxonomy
Representative gene: GCF_022496375#LF912_RS08130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_022496375
AssemblyASM2249637v1 · Contighaploid
Genome composition2 413 224 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 10 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key