1 HisKA_3#1
244-302 aa · 59 aa · 7.4% of protein
Raw token
HisKA_3:244:0.0000000000000161:302:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LF912_RS04250
Histidine kinase, Classic
Bifidobacterium longum · GCF_022496375
ClassHKTypeClassicLength797 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022496375#LF912_RS04250Stable P2CS identifier used across views.
GenomeGCF_022496375Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length797 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 797 aa (28.1%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa797 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
345-438 aa · 94 aa · 11.8% of protein
Raw token
HATPase_c:345:0.000000000000214:438:110:1093 HisKA_3#3
694-764 aa · 71 aa · 8.9% of protein
Raw token
HisKA_3:694:0.0000317:764:71:68- Raw architecture: HisKA_3:244:0.0000000000000161:302:59:68#HATPase_c:345:0.000000000000214:438:110:109#HisKA_3:694:0.0000317:764:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022496375::NZ_JAIZGW010000004.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span165925-169262Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLF912_04270RefSeq proteinWP_240835622.1
Context group ID
GCF_022496375::NZ_JAIZGW010000004.1::G00006Context members
LF912_RS04245LF912_RS04250
Partner locus tags
LF912_RS04245LF912_RS04250
Partner old locus tags
LF912_04265LF912_04270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_240835622.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLF912_RS04250Primary locus identifier stored in the genes table.
Old locus tagLF912_04270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIZGW010000004.1Sequence record reported by the local genomic context database.
Genomic interval166 869-169 262 nt2 394 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span165 925-169 262 ntGCF_022496375::NZ_JAIZGW010000004.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022496375::NZ_JAIZGW010000004.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIZGW010000004.1All displayed genes belong to this local TCS context.
Neighborhood span165 925-169 262 nt3 338 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
165 925 nt169 262 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LF912_RS04245GCF_022496375#LF912_RS04245
RRNarL
165 925-166 785 nt · Reverse (-)
LF912_RS04250GCF_022496375#LF912_RS04250
HKClassicCurrent focus
166 869-169 262 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022496375#LF912_RS04250The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0562606
Simplified PFAM architecture for HKOC_0562606
PFAM domain coverage: 412 / 797 aa (51.7%)
1 aa797 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[13-138] | HisKA_3[244-305] | HATPase_c[345-437] | DUF7134[485-615]
- Domain count: 4
- Matched identifier: HKOC_0562606
- Positioned domains: DUF7134 13-138 ; HisKA_3 244-305 ; HATPase_c 345-437 ; DUF7134 485-615
Cluster members and taxonomy
Representative gene: GCF_022496375#LF912_RS04250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_022496375
AssemblyASM2249637v1 · Contighaploid
Genome composition2 413 224 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 10 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key