1 HisKA#1
184-249 aa · 66 aa · 14.3% of protein
Raw token
HisKA:184:0.00000000000345:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LF917_RS01610
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_022496265
ClassHKTypeClassicLength461 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022496265#LF917_RS01610Stable P2CS identifier used across views.
GenomeGCF_022496265Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length461 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 461 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
312-424 aa · 113 aa · 24.5% of protein
Raw token
HATPase_c:312:4.24e-29:424:113:109- Raw architecture: HisKA:184:0.00000000000345:249:66:64#HATPase_c:312:4.24e-29:424:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022496265::NZ_JAIZGQ010000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span197141-199311Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLF917_01610RefSeq proteinWP_240817114.1
Context group ID
GCF_022496265::NZ_JAIZGQ010000002.1::G00004Context members
LF917_RS01610LF917_RS01615
Partner locus tags
LF917_RS01610LF917_RS01615
Partner old locus tags
LF917_01610LF917_01615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_240817114.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLF917_RS01610Primary locus identifier stored in the genes table.
Old locus tagLF917_01610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIZGQ010000002.1Sequence record reported by the local genomic context database.
Genomic interval197 141-198 526 nt1 386 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span197 141-199 311 ntGCF_022496265::NZ_JAIZGQ010000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022496265::NZ_JAIZGQ010000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIZGQ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span197 141-199 311 nt2 171 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
197 141 nt199 311 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LF917_RS01610GCF_022496265#LF917_RS01610
HKClassicCurrent focus
197 141-198 526 nt · Forward (+)
LF917_RS01615GCF_022496265#LF917_RS01615
RROmpR
198 607-199 311 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022496265#LF917_RS01610The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1827463
Simplified PFAM architecture for HKOC_1827463
PFAM domain coverage: 177 / 461 aa (38.4%)
1 aa461 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1827463
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_022496265#LF917_RS01610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_022496265
AssemblyASM2249626v1 · Contighaploid
Genome composition2 335 833 bp · 57,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 13 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key