1 Response_reg#1
166-276 aa · 111 aa · 29.6% of protein
Raw token
Response_reg:166:3.96e-31:276:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MMS41_RS28580
Response regulator NarL family
Bacillus mycoides · GCF_022458665
ClassRRTypeNarLLength375 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022458665#MMS41_RS28580Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length375 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 375 aa (44.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa375 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
313-368 aa · 56 aa · 14.9% of protein
Raw token
HTH_LUXR:313:1.51e-18:368:56:58- Raw architecture: Response_reg:166:3.96e-31:276:111:111#HTH_LUXR:313:1.51e-18:368:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022458665::NZ_JAKGBR010000025.1::G00077
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-1129Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022458665::NZ_JAKGBR010000025.1::G00077Context members
MMS41_RS28580
Partner locus tags
MMS41_RS28580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_240381202.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMMS41_RS28580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAKGBR010000025.1Sequence record reported by the local genomic context database.
Genomic interval1-1 129 nt1 129 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 129 ntGCF_022458665::NZ_JAKGBR010000025.1::G00077
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022458665::NZ_JAKGBR010000025.1::G00077Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKGBR010000025.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 129 nt1 129 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 129 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MMS41_RS28580GCF_022458665#MMS41_RS28580
RRNarLCurrent focus
1-1 129 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022458665#MMS41_RS28580The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg + GerE3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0433358
Simplified PFAM architecture for RROC_0433358
PFAM domain coverage: 252 / 375 aa (67.2%)
1 aa375 aa
HATPase_cResponse_regGerE
- Simplified architecture: HATPase_c + Response_reg + GerE
- Raw architecture: HATPase_c[68-153] | Response_reg[165-275] | GerE[314-368]
- Domain count: 3
- Matched identifier: RROC_0433358
- Positioned domains: HATPase_c 68-153 ; Response_reg 165-275 ; GerE 314-368
Cluster members and taxonomy
Representative gene: GCF_022458665#MMS41_RS28580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_022458665
AssemblyASM2245866v1 · Contighaploid
Genome composition5 974 132 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 135 · HK 72 · RR 63CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key