1 HAMP#1
158-226 aa · 69 aa · 15.3% of protein
Raw token
HAMP:158:0.000000000000441:226:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MMS41_RS00360
Histidine kinase, Classic
Bacillus mycoides · GCF_022458665
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022458665#MMS41_RS00360Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 450 aa (54.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-297 aa · 67 aa · 14.9% of protein
Raw token
HisKA:231:7.48e-17:297:67:643 HATPase_c#3
344-450 aa · 107 aa · 23.8% of protein
Raw token
HATPase_c:344:1.73e-28:450:108:109- Raw architecture: HAMP:158:0.000000000000441:226:69:69#HisKA:231:7.48e-17:297:67:64#HATPase_c:344:1.73e-28:450:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022458665::NZ_JAKGBR010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span95561-97599Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022458665::NZ_JAKGBR010000001.1::G00002Context members
MMS41_RS00355MMS41_RS00360
Partner locus tags
MMS41_RS00355MMS41_RS00360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_240379668.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMMS41_RS00360Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAKGBR010000001.1Sequence record reported by the local genomic context database.
Genomic interval96 247-97 599 nt1 353 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span95 561-97 599 ntGCF_022458665::NZ_JAKGBR010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022458665::NZ_JAKGBR010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKGBR010000001.1All displayed genes belong to this local TCS context.
Neighborhood span95 561-97 599 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 561 nt97 599 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MMS41_RS00355GCF_022458665#MMS41_RS00355
RROmpR
95 561-96 250 nt · Forward (+)
MMS41_RS00360GCF_022458665#MMS41_RS00360
HKClassicCurrent focus
96 247-97 599 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022458665#MMS41_RS00360The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1967875
Simplified PFAM architecture for HKOC_1967875
PFAM domain coverage: 224 / 450 aa (49.8%)
1 aa450 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[175-225] | HisKA[231-296] | HATPase_c[344-450]
- Domain count: 3
- Matched identifier: HKOC_1967875
- Positioned domains: HAMP 175-225 ; HisKA 231-296 ; HATPase_c 344-450
Cluster members and taxonomy
Representative gene: GCF_022458665#MMS41_RS00360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_022458665
AssemblyASM2245866v1 · Contighaploid
Genome composition5 974 132 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 135 · HK 72 · RR 63CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key