1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:9.71e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MMS41_RS12400
Response regulator OmpR family
Bacillus mycoides · GCF_022458665
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022458665#MMS41_RS12400Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:153:3.65e-32:229:77:77- Raw architecture: Response_reg:5:9.71e-40:114:111:111#Trans_reg_C:153:3.65e-32:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022458665::NZ_JAKGBR010000004.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span156384-158173Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022458665::NZ_JAKGBR010000004.1::G00029Context members
MMS41_RS12395MMS41_RS12400
Partner locus tags
MMS41_RS12395MMS41_RS12400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002032985.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B9DTL8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B9DTL8_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMMS41_RS12400Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAKGBR010000004.1Sequence record reported by the local genomic context database.
Genomic interval157 460-158 173 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span156 384-158 173 ntGCF_022458665::NZ_JAKGBR010000004.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022458665::NZ_JAKGBR010000004.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKGBR010000004.1All displayed genes belong to this local TCS context.
Neighborhood span156 384-158 173 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
156 384 nt158 173 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MMS41_RS12395GCF_022458665#MMS41_RS12395
HKClassic
156 384-157 463 nt · Reverse (-)
MMS41_RS12400GCF_022458665#MMS41_RS12400
RROmpRCurrent focus
157 460-158 173 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000513155#BW1_RS00320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0963102
Simplified PFAM architecture for RROC_0963102
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0963102
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000513155#BW1_RS00320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_022458665
AssemblyASM2245866v1 · Contighaploid
Genome composition5 974 132 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 135 · HK 72 · RR 63CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key