1 HisKA#1
117-169 aa · 53 aa · 16.2% of protein
Raw token
HisKA:117:0.00000023:169:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MMS41_RS03345
Histidine kinase, Classic
Bacillus mycoides · GCF_022458665
ClassHKTypeClassicLength328 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022458665#MMS41_RS03345Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length328 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 328 aa (49.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
215-324 aa · 110 aa · 33.5% of protein
Raw token
HATPase_c:215:1.73e-24:324:110:109- Raw architecture: HisKA:117:0.00000023:169:59:64#HATPase_c:215:1.73e-24:324:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022458665::NZ_JAKGBR010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span652059-653749Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022458665::NZ_JAKGBR010000001.1::G00005Context members
MMS41_RS03340MMS41_RS03345
Partner locus tags
MMS41_RS03340MMS41_RS03345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_240380064.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMMS41_RS03345Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAKGBR010000001.1Sequence record reported by the local genomic context database.
Genomic interval652 763-653 749 nt987 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span652 059-653 749 ntGCF_022458665::NZ_JAKGBR010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022458665::NZ_JAKGBR010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKGBR010000001.1All displayed genes belong to this local TCS context.
Neighborhood span652 059-653 749 nt1 691 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
652 059 nt653 749 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MMS41_RS03340GCF_022458665#MMS41_RS03340
RROmpR
652 059-652 763 nt · Forward (+)
MMS41_RS03345GCF_022458665#MMS41_RS03345
HKClassicCurrent focus
652 763-653 749 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022458665#MMS41_RS03345The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2860449
Simplified PFAM architecture for HKOC_2860449
PFAM domain coverage: 110 / 328 aa (33.5%)
1 aa328 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[216-325]
- Domain count: 1
- Matched identifier: HKOC_2860449
- Positioned domains: HATPase_c 216-325
Cluster members and taxonomy
Representative gene: GCF_022458665#MMS41_RS03345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_022458665
AssemblyASM2245866v1 · Contighaploid
Genome composition5 974 132 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 135 · HK 72 · RR 63CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key