1 HAMP#1
164-232 aa · 69 aa · 15.2% of protein
Raw token
HAMP:164:0.00000147:232:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LCT52_RS05405
Histidine kinase, Classic
Escherichia coli · GCF_022396775
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022396775#LCT52_RS05405Stable P2CS identifier used across views.
GenomeGCF_022396775Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 455 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-301 aa · 64 aa · 14.1% of protein
Raw token
HisKA:238:0.00000000000468:301:64:643 HATPase_c#3
348-442 aa · 95 aa · 20.9% of protein
Raw token
HATPase_c:348:9.78e-26:442:99:109- Raw architecture: HAMP:164:0.00000147:232:70:69#HisKA:238:0.00000000000468:301:64:64#HATPase_c:348:9.78e-26:442:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022396775::NZ_JAIVCG010000004.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span104-2127Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLCT52_05415RefSeq proteinWP_239944205.1
Context group ID
GCF_022396775::NZ_JAIVCG010000004.1::G00032Context members
LCT52_RS05405LCT52_RS05410
Partner locus tags
LCT52_RS05405LCT52_RS05410
Partner old locus tags
LCT52_05415LCT52_05420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_239944205.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLCT52_RS05405Primary locus identifier stored in the genes table.
Old locus tagLCT52_05415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIVCG010000004.1Sequence record reported by the local genomic context database.
Genomic interval104-1 471 nt1 368 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span104-2 127 ntGCF_022396775::NZ_JAIVCG010000004.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022396775::NZ_JAIVCG010000004.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIVCG010000004.1All displayed genes belong to this local TCS context.
Neighborhood span104-2 127 nt2 024 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 nt2 127 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LCT52_RS05405GCF_022396775#LCT52_RS05405
HKClassicCurrent focus
104-1 471 nt · Reverse (-)
LCT52_RS05410GCF_022396775#LCT52_RS05410
RROmpR
1 468-2 127 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022396775#LCT52_RS05405The current gene is the representative for this cluster.
PFAM architecture2CSK_N + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1906009
Simplified PFAM architecture for HKOC_1906009
PFAM domain coverage: 299 / 455 aa (65.7%)
1 aa455 aa
2CSK_NHisKAHATPase_c
- Simplified architecture: 2CSK_N + HisKA + HATPase_c
- Raw architecture: 2CSK_N[23-157] | HisKA[237-301] | HATPase_c[349-447]
- Domain count: 3
- Matched identifier: HKOC_1906009
- Positioned domains: 2CSK_N 23-157 ; HisKA 237-301 ; HATPase_c 349-447
Cluster members and taxonomy
Representative gene: GCF_022396775#LCT52_RS05405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_022396775
AssemblyASM2239677v1 · Contighaploid
Genome composition5 127 006 bp · 51,0% GCEscherichia coli
Signal transduction countsGenes 61 · HK 29 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key