1 Response_reg#1
29-133 aa · 105 aa · 39.6% of protein
Raw token
Response_reg:29:2.4e-28:133:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MJO50_RS17260
Response regulator OmpR family
Clostridioides difficile · GCF_022359795
ClassRRTypeOmpRLength265 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022359795#MJO50_RS17260Stable P2CS identifier used across views.
GenomeGCF_022359795Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length265 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 265 aa (68.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa265 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
184-260 aa · 77 aa · 29.1% of protein
Raw token
Trans_reg_C:184:6.06e-32:260:77:77- Raw architecture: Response_reg:29:2.4e-28:133:106:111#Trans_reg_C:184:6.06e-32:260:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022359795::NZ_JAKSEB010000516.1::G00053
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-798Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMJO50_17265RefSeq proteinWP_331473872.1
Context group ID
GCF_022359795::NZ_JAKSEB010000516.1::G00053Context members
MJO50_RS17260
Partner locus tags
MJO50_RS17260
Partner old locus tags
MJO50_17265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_331473872.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMJO50_RS17260Primary locus identifier stored in the genes table.
Old locus tagMJO50_17265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKSEB010000516.1Sequence record reported by the local genomic context database.
Genomic interval1-798 nt798 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-798 ntGCF_022359795::NZ_JAKSEB010000516.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022359795::NZ_JAKSEB010000516.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKSEB010000516.1All displayed genes belong to this local TCS context.
Neighborhood span1-798 nt798 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt798 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MJO50_RS17260GCF_022359795#MJO50_RS17260
RROmpRCurrent focus
1-798 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022359795#MJO50_RS17260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0632387
Simplified PFAM architecture for RROC_0632387
PFAM domain coverage: 184 / 265 aa (69.4%)
1 aa265 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[29-135] | Trans_reg_C[184-260]
- Domain count: 2
- Matched identifier: RROC_0632387
- Positioned domains: Response_reg 29-135 ; Trans_reg_C 184-260
Cluster members and taxonomy
Representative gene: GCF_022359795#MJO50_RS17260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_022359795
AssemblyASM2235979v1 · Contighaploid
Genome composition4 000 071 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key