1 HisKA#1
102-168 aa · 67 aa · 20.7% of protein
Raw token
HisKA:102:0.0000000000000183:168:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MJO50_RS08245
Histidine kinase, Classic
Clostridioides difficile · GCF_022359795
ClassHKTypeClassicLength323 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022359795#MJO50_RS08245Stable P2CS identifier used across views.
GenomeGCF_022359795Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length323 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 323 aa (47.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa323 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-306 aa · 86 aa · 26.6% of protein
Raw token
HATPase_c:221:0.0000000603:306:90:109- Raw architecture: HisKA:102:0.0000000000000183:168:67:64#HATPase_c:221:0.0000000603:306:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022359795::NZ_JAKSEB010000114.1::G00026
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-972Genomic interval covered by the local TCS group.
Identifiers
Old locus tagMJO50_08245RefSeq proteinWP_239818894.1
Context group ID
GCF_022359795::NZ_JAKSEB010000114.1::G00026Context members
MJO50_RS08245
Partner locus tags
MJO50_RS08245
Partner old locus tags
MJO50_08245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_239818894.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMJO50_RS08245Primary locus identifier stored in the genes table.
Old locus tagMJO50_08245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKSEB010000114.1Sequence record reported by the local genomic context database.
Genomic interval1-972 nt972 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-972 ntGCF_022359795::NZ_JAKSEB010000114.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022359795::NZ_JAKSEB010000114.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKSEB010000114.1All displayed genes belong to this local TCS context.
Neighborhood span1-972 nt972 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt972 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MJO50_RS08245GCF_022359795#MJO50_RS08245
HKClassicCurrent focus
1-972 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022359795#MJO50_RS08245The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2866529
Simplified PFAM architecture for HKOC_2866529
PFAM domain coverage: 193 / 323 aa (59.8%)
1 aa323 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[48-89] | HisKA[103-168] | HATPase_c[219-303]
- Domain count: 3
- Matched identifier: HKOC_2866529
- Positioned domains: HAMP 48-89 ; HisKA 103-168 ; HATPase_c 219-303
Cluster members and taxonomy
Representative gene: GCF_022359795#MJO50_RS08245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_022359795
AssemblyASM2235979v1 · Contighaploid
Genome composition4 000 071 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key