1 HAMP#1
293-362 aa · 70 aa · 11.9% of protein
Raw token
HAMP:293:0.000000012:362:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0P07_RS05930
Histidine kinase, Classic
Blautia faecis · GCF_022136745
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136745#L0P07_RS05930Stable P2CS identifier used across views.
GenomeGCF_022136745Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 586 aa (43.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-455 aa · 79 aa · 13.5% of protein
Raw token
His_kinase:377:3.11e-28:455:80:803 HATPase_c#3
478-580 aa · 103 aa · 17.6% of protein
Raw token
HATPase_c:478:0.00000000322:580:105:109- Raw architecture: HAMP:293:0.000000012:362:70:69#His_kinase:377:3.11e-28:455:80:80#HATPase_c:478:0.00000000322:580:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136745::NZ_JAKNFE010000008.1::G00073
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4804-7309Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0P07_05930RefSeq proteinWP_118580292.1
Context group ID
GCF_022136745::NZ_JAKNFE010000008.1::G00073Context members
L0P07_RS05925L0P07_RS05930
Partner locus tags
L0P07_RS05925L0P07_RS05930
Partner old locus tags
L0P07_05925L0P07_05930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118580292.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0P07_RS05930Primary locus identifier stored in the genes table.
Old locus tagL0P07_05930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNFE010000008.1Sequence record reported by the local genomic context database.
Genomic interval5 549-7 309 nt1 761 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 804-7 309 ntGCF_022136745::NZ_JAKNFE010000008.1::G00073
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136745::NZ_JAKNFE010000008.1::G00073Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNFE010000008.1All displayed genes belong to this local TCS context.
Neighborhood span4 804-7 309 nt2 506 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 804 nt7 309 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0P07_RS05925GCF_022136745#L0P07_RS05925
RRunclassified
4 804-5 556 nt · Reverse (-)
L0P07_RS05930GCF_022136745#L0P07_RS05930
HKClassicCurrent focus
5 549-7 309 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480145#DW904_RS10615Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1132427
Simplified PFAM architecture for HKOC_1132427
PFAM domain coverage: 234 / 586 aa (39.9%)
1 aa586 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[310-361] | His_kinase[378-455] | HATPase_c[475-578]
- Domain count: 3
- Matched identifier: HKOC_1132427
- Positioned domains: HAMP 310-361 ; His_kinase 378-455 ; HATPase_c 475-578
Cluster members and taxonomy
Representative gene: GCF_003480145#DW904_RS10615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136745
AssemblyContighaploid
Genome composition4 270 763 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 137 · HK 70 · RR 66CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key