1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:4.88e-28:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0P07_RS00655
Response regulator OmpR family
Blautia faecis · GCF_022136745
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136745#L0P07_RS00655Stable P2CS identifier used across views.
GenomeGCF_022136745Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-218 aa · 72 aa · 32.0% of protein
Raw token
Trans_reg_C:147:1.23e-22:218:76:77- Raw architecture: Response_reg:5:4.88e-28:114:110:111#Trans_reg_C:147:1.23e-22:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136745::NZ_JAKNFE010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span160439-162008Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0P07_00655RefSeq proteinWP_173734921.1
Context group ID
GCF_022136745::NZ_JAKNFE010000001.1::G00005Context members
L0P07_RS00655L0P07_RS00660
Partner locus tags
L0P07_RS00655L0P07_RS00660
Partner old locus tags
L0P07_00655L0P07_00660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173734921.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H6D3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H6D3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0P07_RS00655Primary locus identifier stored in the genes table.
Old locus tagL0P07_00655Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNFE010000001.1Sequence record reported by the local genomic context database.
Genomic interval160 439-161 116 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span160 439-162 008 ntGCF_022136745::NZ_JAKNFE010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136745::NZ_JAKNFE010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNFE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span160 439-162 008 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 439 nt162 008 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0P07_RS00655GCF_022136745#L0P07_RS00655
RROmpRCurrent focus
160 439-161 116 nt · Forward (+)
L0P07_RS00660GCF_022136745#L0P07_RS00660
HKClassic
161 109-162 008 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS05065Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1488358
Simplified PFAM architecture for RROC_1488358
PFAM domain coverage: 181 / 225 aa (80.4%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1488358
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS05065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136745
AssemblyContighaploid
Genome composition4 270 763 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 137 · HK 70 · RR 66CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key