1 dCache_1#1
80-282 aa · 203 aa · 26.6% of protein
Raw token
dCache_1:80:0.0000685:282:207:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0N15_RS00070
Histidine kinase, Hybrid
Anaerostipes hadrus · GCF_022134965
ClassHKTypeHybridLength762 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022134965#L0N15_RS00070Stable P2CS identifier used across views.
GenomeGCF_022134965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length762 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage504 / 762 aa (66.1%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa762 aa
Domain-by-domain annotation4 items
2 HisKA#2
369-435 aa · 67 aa · 8.8% of protein
Raw token
HisKA:369:4.61e-18:435:67:643 HATPase_c#3
483-600 aa · 118 aa · 15.5% of protein
Raw token
HATPase_c:483:1.95e-27:600:118:1094 Response_reg#4
627-742 aa · 116 aa · 15.2% of protein
Raw token
Response_reg:627:1.83e-25:742:116:111- Raw architecture: dCache_1:80:0.0000685:282:207:195#HisKA:369:4.61e-18:435:67:64#HATPase_c:483:1.95e-27:600:118:109#Response_reg:627:1.83e-25:742:116:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022134965::NZ_JAKNHL010000001.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span18315-20603Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0N15_00070RefSeq proteinWP_118352867.1
Context group ID
GCF_022134965::NZ_JAKNHL010000001.1::G00004Context members
L0N15_RS00070
Partner locus tags
L0N15_RS00070
Partner old locus tags
L0N15_00070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118352867.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0N15_RS00070Primary locus identifier stored in the genes table.
Old locus tagL0N15_00070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNHL010000001.1Sequence record reported by the local genomic context database.
Genomic interval18 315-20 603 nt2 289 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 315-20 603 ntGCF_022134965::NZ_JAKNHL010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022134965::NZ_JAKNHL010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNHL010000001.1All displayed genes belong to this local TCS context.
Neighborhood span18 315-20 603 nt2 289 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 315 nt20 603 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
L0N15_RS00070GCF_022134965#L0N15_RS00070
HKHybridCurrent focus
18 315-20 603 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022134965#L0N15_RS00070The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0639477
Simplified PFAM architecture for HKOC_0639477
PFAM domain coverage: 300 / 762 aa (39.4%)
1 aa762 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[369-435] | HATPase_c[483-599] | Response_reg[627-742]
- Domain count: 3
- Matched identifier: HKOC_0639477
- Positioned domains: HisKA 369-435 ; HATPase_c 483-599 ; Response_reg 627-742
Cluster members and taxonomy
Representative gene: GCF_022134965#L0N15_RS00070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_022134965
AssemblyContighaploid
Genome composition3 469 904 bp · 36,5% GCAnaerostipes hadrus
Signal transduction countsGenes 52 · HK 26 · RR 24CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key