1 Response_reg#1
3-111 aa · 109 aa · 48.7% of protein
Raw token
Response_reg:3:5.8e-30:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L1015_RS00145
Response regulator OmpR family
Escherichia coli · GCF_021547115
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021547115#L1015_RS00145Stable P2CS identifier used across views.
GenomeGCF_021547115Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:145:8.72e-22:220:77:77- Raw architecture: Response_reg:3:5.8e-30:111:109:111#Trans_reg_C:145:8.72e-22:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021547115::NZ_JAKFSK010000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14943-17074Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL1015_00145RefSeq proteinWP_235636582.1
Context group ID
GCF_021547115::NZ_JAKFSK010000001.1::G00007Context members
L1015_RS00145L1015_RS00150
Partner locus tags
L1015_RS00145L1015_RS00150
Partner old locus tags
L1015_00145L1015_00150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235636582.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL1015_RS00145Primary locus identifier stored in the genes table.
Old locus tagL1015_00145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKFSK010000001.1Sequence record reported by the local genomic context database.
Genomic interval14 943-15 617 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 943-17 074 ntGCF_021547115::NZ_JAKFSK010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021547115::NZ_JAKFSK010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKFSK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span14 943-17 074 nt2 132 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 943 nt17 074 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L1015_RS00145GCF_021547115#L1015_RS00145
RROmpRCurrent focus
14 943-15 617 nt · Forward (+)
L1015_RS00150GCF_021547115#L1015_RS00150
HKClassic
15 614-17 074 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021547115#L1015_RS00145The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1558688
Simplified PFAM architecture for RROC_1558688
PFAM domain coverage: 185 / 224 aa (82.6%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1558688
- Positioned domains: Response_reg 3-112 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_021547115#L1015_RS00145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 562 · GCF_021547115
AssemblyASM2154711v1 · Contighaploid
Genome composition4 886 108 bp · 50,5% GCEscherichia coli
Signal transduction countsGenes 62 · HK 30 · RR 32CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key