1 SBP_bac_3#1
53-273 aa · 221 aa · 33.5% of protein
Raw token
SBP_bac_3:53:1.37e-41:273:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWF05_RS13760
Histidine kinase, Classic
Clostridioides difficile · GCF_021284615
ClassHKTypeClassicLength659 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021284615#LWF05_RS13760Stable P2CS identifier used across views.
GenomeGCF_021284615Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length659 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage386 / 659 aa (58.6%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa659 aa
Domain-by-domain annotation3 items
2 HisKA#2
441-503 aa · 63 aa · 9.6% of protein
Raw token
HisKA:441:0.0000000000000505:503:63:643 HATPase_c#3
552-653 aa · 102 aa · 15.5% of protein
Raw token
HATPase_c:552:2.81e-23:653:103:109- Raw architecture: SBP_bac_3:53:1.37e-41:273:230:224#HisKA:441:0.0000000000000505:503:63:64#HATPase_c:552:2.81e-23:653:103:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021284615::NZ_JAJSNT010000420.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76-3377Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWF05_13730RefSeq proteinWP_232880279.1
Context group ID
GCF_021284615::NZ_JAJSNT010000420.1::G00021Context members
LWF05_RS13755LWF05_RS13760
Partner locus tags
LWF05_RS13755LWF05_RS13760
Partner old locus tags
LWF05_13725LWF05_13730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232880279.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWF05_RS13760Primary locus identifier stored in the genes table.
Old locus tagLWF05_13730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSNT010000420.1Sequence record reported by the local genomic context database.
Genomic interval1 398-3 377 nt1 980 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76-3 377 ntGCF_021284615::NZ_JAJSNT010000420.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284615::NZ_JAJSNT010000420.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSNT010000420.1All displayed genes belong to this local TCS context.
Neighborhood span76-3 377 nt3 302 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 nt3 377 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWF05_RS13755GCF_021284615#LWF05_RS13755
RRNtrC
76-1 398 nt · Reverse (-)
LWF05_RS13760GCF_021284615#LWF05_RS13760
HKClassicCurrent focus
1 398-3 377 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021284575#LWE98_RS15750Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0843923
Simplified PFAM architecture for HKOC_0843923
PFAM domain coverage: 385 / 671 aa (57.4%)
1 aa671 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[67-284] | HisKA[455-516] | HATPase_c[562-666]
- Domain count: 3
- Matched identifier: HKOC_0843923
- Positioned domains: SBP_bac_3 67-284 ; HisKA 455-516 ; HATPase_c 562-666
Cluster members and taxonomy
Representative gene: GCF_021284575#LWE98_RS15750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284615
AssemblyASM2128461v1 · Contighaploid
Genome composition4 046 722 bp · 29,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key