1 SBP_bac_3#1
65-285 aa · 221 aa · 32.9% of protein
Raw token
SBP_bac_3:65:1.66e-41:285:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LWE98_RS15750
Histidine kinase, Classic
Clostridioides difficile · GCF_021284575
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_021284575#LWE98_RS15750Stable P2CS identifier used across views.
GenomeGCF_021284575Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage386 / 671 aa (57.5%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation3 items
2 HisKA#2
453-515 aa · 63 aa · 9.4% of protein
Raw token
HisKA:453:0.0000000000000409:515:63:643 HATPase_c#3
564-665 aa · 102 aa · 15.2% of protein
Raw token
HATPase_c:564:2.24e-23:665:103:109- Raw architecture: SBP_bac_3:65:1.66e-41:285:230:224#HisKA:453:0.0000000000000409:515:63:64#HATPase_c:564:2.24e-23:665:103:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_021284575::NZ_JAJSND010000392.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-3338Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLWE98_15785RefSeq proteinWP_232889906.1
Context group ID
GCF_021284575::NZ_JAJSND010000392.1::G00018Context members
LWE98_RS15750LWE98_RS15755
Partner locus tags
LWE98_RS15750LWE98_RS15755
Partner old locus tags
LWE98_15785LWE98_15790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_232889906.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLWE98_RS15750Primary locus identifier stored in the genes table.
Old locus tagLWE98_15785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJSND010000392.1Sequence record reported by the local genomic context database.
Genomic interval1-2 016 nt2 016 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-3 338 ntGCF_021284575::NZ_JAJSND010000392.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_021284575::NZ_JAJSND010000392.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJSND010000392.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 338 nt3 338 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 338 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LWE98_RS15750GCF_021284575#LWE98_RS15750
HKClassicCurrent focus
1-2 016 nt · Forward (+)
LWE98_RS15755GCF_021284575#LWE98_RS15755
RRNtrC
2 016-3 338 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_021284575#LWE98_RS15750The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0843923
Simplified PFAM architecture for HKOC_0843923
PFAM domain coverage: 385 / 671 aa (57.4%)
1 aa671 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[67-284] | HisKA[455-516] | HATPase_c[562-666]
- Domain count: 3
- Matched identifier: HKOC_0843923
- Positioned domains: SBP_bac_3 67-284 ; HisKA 455-516 ; HATPase_c 562-666
Cluster members and taxonomy
Representative gene: GCF_021284575#LWE98_RS15750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_021284575
AssemblyASM2128457v1 · Contighaploid
Genome composition4 114 732 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 49 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key